Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq52 105 8e-18 >seq52 Length=2291593 Score = 105 bits (116), Expect = 8e-18 Identities = 239/354 (68%), Gaps = 4/354 (1%) Strand=Plus/Minus Query 160609 TCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAAGTTTA 160668 ||||| || || |||||| ||| || |||| || ||||| || || || ||| | Sbjct 381885 TCAGCGCCTGAACCATCTCTCTGTTGGTTTTGATGGGGAAGTCTGTCCCACAGGTGTTAA 381826 Query 160669 TCACGTACTTCCATTTCGCGC-TCAGGTCGTGCAGGTCCCTCATGCAATTAATATCTGCC 160727 || |||| |||| | | | || || |||| || |||||| || | ||||||| Sbjct 381825 GCAGGTACCTCCACTGGATGTGTGAGCTCA-GCAGATCTTCCATGCAGTTTAAATCTGCC 381767 Query 160728 TGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAGACGTTA 160787 ||||| || ||| ||||| || || || | |||| | | ||||| | ||| || ||| Sbjct 381766 TGCACCCGAGACCATGAAGCATATACCACTCTTTCTAATCTGCTGGCTATAAACACATTA 381707 Query 160788 TCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTT-CGGTC 160846 || || || | ||| || |||| || | || | || | | ||| | ||| Sbjct 381706 GGAAAGCAGGAGATAATTTCCTCCACTGCTA-TCCTAAATTTTTCTGAGGATTTCCTGTC 381648 Query 160847 CACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCGAACAT 160906 ||| ||||| || || | ||||||||| || || || || | || | | ||| ||||| Sbjct 381647 CACATGCACACAGTAGATGTTCTGAGGAGCATAAATAGCTCGTAGAAGTCGCTCAAACAT 381588 Query 160907 CTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTC 160960 ||| ||||| | ||| || || || ||||| || || ||||| || ||||||| Sbjct 381587 CTCAATCTTCTCATGAATTACCATCGAGTAAGCAATGGGAAAGTCTCTCTCCTC 381534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577173787279440