Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq67 163 3e-35 seq331 104 2e-17 >seq67 Length=1635559 Score = 163 bits (180), Expect = 3e-35 Identities = 938/1479 (63%), Gaps = 67/1479 (5%) Strand=Plus/Minus Query 138540 GTAAATGTTGTTGGTGAAAGGCTCAAACGATTCGTTGTTTCCCAGAATCTGAGCCGTGGT 138599 ||| |||||| ||||| | | || | || |||||||| ||||| ||||| || |||| Sbjct 33332 GTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGA 33273 Query 138600 CGCGGTCGGCATGTACGCCACCAAAAGAGAATTCCGTAAACCGTGAAGCTTGATTCGTTC 138659 || || ||||| |||| || || |||| | ||||| ||| ||| Sbjct 33272 GGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTC 33213 Query 138660 CTTGAGCGACGACCAGTCCCACAAATCGCTAGGTTTTTTGTTCCACATATCGTACTGTAA 138719 ||| ||| | ||||||| ||| |||| | || | || | |||||| |||||||| | Sbjct 33212 CTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGAG 33153 Query 138720 CATTCCCAAACTTGCGGGACTGCCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAA 138779 || ||| || | ||| ||||||||||| ||||| || | ||| |||| Sbjct 33152 GATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAG 33093 Query 138780 CTCGTTGCTCGCCTCGAGCGCACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAA 138839 |||| ||||||||| || || | ||||| || || || || || || |||| Sbjct 33092 CTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAG 33033 Query 138840 TCGGGCCTCGGCGCTCTCGTACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTG 138899 | ||||||| ||| || |||| || | || |||| || || |||| ||||| Sbjct 33032 CTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTG 32973 Query 138900 CACGCCCACTCCGACAGGGCGATGGCGCAGATTTGACGCTTTTGCGGCTTCG---ATAGG 138956 ||||| | ||| | || | || ||| || ||| || | |||||| | || Sbjct 32972 AACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGAC---TTCTCCGCTTCGGGCACTGG 32916 Query 138957 ATAATAGTTTACATCGATGATTTTGTTTAAATTTCGCACGACCACCTTAGT--CGTATGC 139014 ||| |||| | |||||||| ||||| || |||| || | || || || | |||| Sbjct 32915 ATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCACAGATGC 32856 Query 139015 TTTAATCGTTCAAAATCGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTG 139074 || | || ||| || | || ||| || | ||||| ||| ||||| Sbjct 32855 --TAGTTTTTTAAAGTCAAAAGT----CCG--CTCAGGGGTGACGT--ACA----TGTTG 32810 Query 139075 ACACAAATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATT 139134 | ||| ||||| | || || ||||| || || ||| | | ||||||| || ||| Sbjct 32809 AGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATT 32750 Query 139135 TCGGCACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTA 139194 || | || | || || | ||||| || || | ||| || || ||||| |||||||| Sbjct 32749 TCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTG 32690 Query 139195 CAAGCATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAAT 139254 || || |||||||| ||||| ||||| || || ||||| || | ||| || ||| Sbjct 32689 CAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCG 32630 Query 139255 TTGAACAAGTCCCTAGCTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTC- 139313 | ||| ||| ||| || || ||| | | | | | | | | | ||| || Sbjct 32629 TGCCACA----CCT-GCTGAGCCTTCAC-CAC---ACGCTTGACCCTCCCCTCCTTCTCA 32579 Query 139314 --------GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTG 139365 |||||| | || || ||||| | || || || |||||| Sbjct 32578 TATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCA 32519 Query 139366 TCAGGACACATGAGCGACCATACGCCGTTCGCCTT-GACGCGCCTCATGAACAGATCCGG 139424 | |||||||| || ||||| | ||| || || || | | ||||||||| || || Sbjct 32518 TTGGGACACATCAGAGACCAGTCTTGGTT-GCTTTCCACTCTCTTCATGAACAAGTCAGG 32460 Query 139425 AATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTT 139484 ||||||| ||| | | | || | ||| ||| || ||| || |||| || Sbjct 32459 GATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTT 32400 Query 139485 CATGTTAAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC 139544 || | ||||| ||||| || || |||||| || ||||| || ||||| | || || Sbjct 32399 CAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCC 32340 Query 139545 ---TTTCCGTTTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACAT 139601 | | ||||| || || ||||| | || | | || ||| | || | || ||| Sbjct 32339 GGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCAT 32280 Query 139602 CGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGG--ATG----GGACTGTTGCGAGC 139655 || | | ||| | | | ||||| |||| ||| ||| ||||| | Sbjct 32279 GGGGACTAACCCGTTTGAGTTGCCGTTTGTGC--CGGCAATGTAGCTCCCTGTT----GA 32226 Query 139656 TCGGACGTCATGT-ACATTGATGCCGATTCCGCC-GCCAAATTTGGATATTAAAACGCAA 139713 || || | || | ||| | |||||||| || ||| | ||| || || | | || Sbjct 32225 TCTGATG-CAGCTGACAGCCACACCGATTCCTCCAGCCGACTTT-GAGATGAGGGCACAC 32168 Query 139714 TCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCA 139772 | || | | || ||||| || ||| ||||||||||||| ||| | || ||| ||||| Sbjct 32167 T-GCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCA 32109 Query 139773 TGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAA 139832 || || || || || || ||||| || |||||||| ||||| ||||| Sbjct 32108 GCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAA 32049 Query 139833 CATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGAT 139892 | | | ||||| || | ||| || || ||||| | || ||| ||| |||||| Sbjct 32048 CCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGAT 31989 Query 139893 ACCGACAGAGACTCGCATCAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttt 139952 || ||||| || | ||| ||||| || ||| ||||||||||| ||| | ||| || Sbjct 31988 GCCAACAGAAACCCTCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTT 31929 Query 139953 tttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCAAAG 139989 ||| || |||| ||| || |||||| |||||||| Sbjct 31928 CAGCAGGTAGGACCG--CTCCAGAGTCTTGAAGCCAAAG 31892 >seq331 Length=323222 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| | Sbjct 7700 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 7641 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || ||||| || Sbjct 7640 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7581 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | |||||||||| || || |||||||| ||| | | | | || || |||||| Sbjct 7580 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAAC 7521 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 7520 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 7486 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || || ||||| || || || || || || || || ||| Sbjct 7928 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 7869 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| || || ||||| || || ||||| || Sbjct 7868 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7809 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || | ||||||||||||| || |||||||| ||| | | | | || || || ||| Sbjct 7808 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 7749 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 || || ||||| || || || ||| | || |||| Sbjct 7748 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCG 7714 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449862204306320