Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq5 215 4e-50 seq2 125 5e-23 seq223 107 1e-17 seq631 100 2e-15 >seq5 Length=8875486 Score = 215 bits (238), Expect = 4e-50 Identities = 943/1475 (64%), Gaps = 19/1475 (1%) Strand=Plus/Plus Query 281431 CACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCT 281490 |||||| ||||| ||||||||||| | || || || || || | || ||||| |||| Sbjct 3524279 CACATTCAGAATTCCATTGGCATCAATGTCGAAGGTTACCTCCACCTGTGGGACACCTCG 3524338 Query 281491 CTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAA 281550 ||||||| ||||| ||| | | ||| | || || || || || || || | Sbjct 3524339 GGGAGCAGGAGGGATACCTGTGAGCTCAAACTTGCCGAGGAGGTTGTTGTCCTTGGTCAT 3524398 Query 281551 TTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGT 281610 || |||||||| | | || || || | | || ||||||||||| || | Sbjct 3524399 GGCTCTCTCACCCTCATACACCTGAATCAGCACACCTGGCTGGTTATCTGAATATGTAGA 3524458 Query 281611 AAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAA 281669 || | ||||| | | || || || || ||||||| | || | | ||||||| Sbjct 3524459 GAAGA-TCTGGGTCTGCTTGGTGGGGATGGTGGTGTTTCGTTTGATTAAAGGTGTCATAA 3524517 Query 281670 TACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTT 281729 ||||| || || || | || ||||| ||||||| ||||| | || | | || || Sbjct 3524518 CTCCACCTGCAGTCTCAATGCCCAGAGACAGAGGAGCCACATCCAGCAGTAGCAAATCTT 3524577 Query 281730 GAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAA 281789 | | ||||| ||| | ||| | || ||||| || || | || |||||||| || | Sbjct 3524578 GGACATTTTCTGAAGTGTCACCCATCAGGATAGCAGCCTGGACTGCTGCACCATAGGCCA 3524637 Query 281790 CAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAGA 281848 |||||||||| || || | | | || | || | | ||||| ||||| | || |||| Sbjct 3524638 CAGCTTCATCTGGGTTGATGCTCTTGTTCAATTCTCTGCCATTAAAAAAGTCCTGCAAGA 3524697 Query 281849 AGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGT 281908 || | | || ||||| | | || || ||||| | || |||||||| | || Sbjct 3524698 GCTTCTGG-ATTTTGGGAATTCTTGTGGAGCCACCAACCAGGACGATTTCATGGATCTTG 3524756 Query 281909 GATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAAC 281968 || |||||||| || | ||| | | || ||||| || || || | || || Sbjct 3524757 GACTTATCCAGCTTGGCATCTTGCAGAGACTTCTCAACTGGATCCAGTGTTCCCCTGAAG 3524816 Query 281969 AAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTC 282026 | ||||| || || || || || || || || ||| | || || || || | Sbjct 3524817 AGCTCTGAGTTGAGCTCCTCAAAGCGTGCCCTTGT--GATTGAGGTGTAGAAGTCGATAC 3524874 Query 282027 CTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAG 282086 | || |||| ||| |||| |||| ||| || || || || || | | || | Sbjct 3524875 CCTCAAACAGAGAGTCAATCTCAAGGCTAGCCTGGGTGCTGGAGGACAGGGTCCTCTTTG 3524934 Query 282087 CACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATT--GATTCAAATCTGT 282144 | | |||||| || || | ||||| | | ||| | || ||| | | | || | Sbjct 3524935 CTCTTTCACAAGCAGTGCGCAGTCTCCTCACTGCTCT--CTTATTTTGGCTGATGTCCTT 3524992 Query 282145 TTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTC 282204 || | |||||| || || || || ||| | | || | || || ||||| || || Sbjct 3524993 CTTGTGTTTTCTTTTAAATTCCTCTACAAAGTGGTTGACCATCCGGTTGTCAAAGTCCTC 3525052 Query 282205 ACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGA 282264 || || | | || | |||| || | | | |||| |||| || ||||||| | Sbjct 3525053 CCCACCAAGATGTGTGTCGCCTGCAGTGGATTTCACTTCAAAAATGCCGTCTTCAATGGT 3525112 Query 282265 CAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT-CATTTCTT 282323 || | | || ||| ||| || ||||| | |||||| || || || || | | | Sbjct 3525113 CAGGATGGACACGTCAAAGGTGCCTCCACCGAGATCAAAGATGAGCACGTTGCGCTCCCC 3525172 Query 282324 TGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTC 282383 | | || ||| ||| || || || || | || || || || || ||||| || || | Sbjct 3525173 TCTTTTACCTTT-ATCCAGGCCGTAGGCGATGGCTGCTGCTGTGGGCTCATTTATGATCC 3525231 Query 282384 TCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGT 282443 ||| |||||| || |||| || || || || || |||||||| || || || || | Sbjct 3525232 TCAGAACATTCAGTCCAGAGATCACCCCAGCGTCCTTGGTGGCTTGCCTCTGGGAGTCAT 3525291 Query 282444 TAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTG 282503 ||||||| || ||||| || || || || | || |||| || ||| | || || | Sbjct 3525292 TAAAATAAGCTGGAACTGTGATGACTGCGTTTGACACTTTTTGTCCCAGGTAGGCTTCAG 3525351 Query 282504 CTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAATATTGCTTGG 282563 | | | ||||||||| | | ||| || || |||| |||||| | | | |||| | Sbjct 3525352 CGATCTCCTTCATTTTAACCAGGACCATGGAGGAGATTTCTTCTGG-GTAGAAGGCTTTG 3525410 Query 282564 AT-TCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAAT 282622 | || || ||| || | | | ||||| | | |||| || ||||| || Sbjct 3525411 GTCTCCCCTTTATACTCAACCTGGACTTTGGGTTTTCCGCTATCATTGATCACTTTGAAG 3525470 Query 282623 GGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCAATTAATCGT 282682 ||||| ||||| || || || ||| |||| |||| | ||| || || | | Sbjct 3525471 GGCCAGAGCTTCATGTCAGACTGGACAACAGGGTCGGTAAACTTTCTCCCGATGAGCCTC 3525530 Query 282683 TTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCA 282742 || |||||||| || || ||| || || | ||| | |||| ||||| ||||||||| Sbjct 3525531 TTGGCATCAAAGATTGTGTTGACGGGGTTCATGGCAACCTGATTCTTGGCAGCATCTCCA 3525590 Query 282743 ATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCA 282802 || || ||||| || ||||| | ||||| ||||| || | || || || || Sbjct 3525591 ATGAGCCTCTCTGTGTCAGTAAAGGCCACATAGCTGGGAGTGGTTCTGTTTCCCTGGTCG 3525650 Query 282803 TTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCT 282862 || || || || || ||||| |||| || | || || |||||| | | || || || Sbjct 3525651 TTGGCGATGATCTCCACTTTGCCATGCTGGAAAACCCCGACACAAGAATAGGTGGTGCCC 3525710 Query 282863 AAATCAATACCAATAGCAAT---TTTATCTGACAT 282894 | |||||| ||||||| || |||| ||||||| Sbjct 3525711 AGATCAATGCCAATAGATATTCCTTTAGCTGACAT 3525745 >seq2 Length=11018341 Score = 125 bits (138), Expect = 5e-23 Identities = 113/142 (80%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| || ||||||||||| ||||| || || | || ||| Sbjct 7191316 TTTTTGTCCAGGCCATAAGCAATGGCTGCAGCAGTTGGCTCATTGATGATGCGCAGCACA 7191375 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 ||||| |||||||| |||| ||||||||||||||||| | || || || || || || Sbjct 7191376 TTAAGCCCAGCAATGGTTCCAGCATCTTTAGTGGCTTGACGCTGGGAGTCATTGAAGTAA 7191435 Query 282452 GCAGGAACAGTAATAACGGCAT 282473 |||||||| |||||||| |||| Sbjct 7191436 GCAGGAACTGTAATAACTGCAT 7191457 Score = 95.1 bits (104), Expect = 9e-14 Identities = 111/150 (74%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 281416 TTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAAT 281475 ||| ||| | |||| ||||| ||||| ||||||||||| | ||||| || || ||||| Sbjct 7190093 TTTGTCAACTGCAGATACATTGAGAATGCCATTGGCATCAATGTCAAAAGTCACCTCAAT 7190152 Query 281476 TTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATT 281535 |||||||| ||||| | |||||||| || || || | |||| | |||||| |||| Sbjct 7190153 CTGAGGGACACCTCTGGGTGCAGGTGGAATACCAGTCAGCTCAAATTTGCCCAGAATATT 7190212 Query 281536 ATTATCTTTAGTGAATTTTCGTTCACCCTC 281565 ||| || || || | || |||||| || Sbjct 7190213 ATTGTCCTTGGTCATGGCTCTTTCACCTTC 7190242 >seq223 Length=448970 Score = 107 bits (118), Expect = 1e-17 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 282332 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 282391 ||||| || || ||||| |||| ||||||||||||||||||||| || || | || ||| Sbjct 201850 TTTTTGTCGAGGCCATAAGCAATAGCAGCAGCAGTTGGTTCATTGATGATACGCAGCACA 201909 Query 282392 TTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATAT 282451 || || |||| ||| | ||||||||||| || || || | || || || || || || Sbjct 201910 TTCAGCCCAGAAATGGTCCCTGCATCTTTGGTAGCCTGGCGCTGAGAGTCATTGAAGTAG 201969 Query 282452 GCAGGAACAGTAATAACGGCATCTGTTAC 282480 ||||| ||||| | || |||| ||||| Sbjct 201970 GCAGGCACAGTCACTACAGCATTAGTTAC 201998 >seq631 Length=169947 Score = 100 bits (110), Expect = 2e-15 Identities = 104/135 (77%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| |||| ||||||||||||||| ||||| || || | || ||| || || |||| Sbjct 157153 CCATAAGCAATAGCAGCAGCAGTTGGCTCATTGATGATACGCAGAACGTTGAGGCCAGAG 157212 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| |||| ||||| |||||||| || | || || ||||| || || || || || ||| Sbjct 157213 ATTGTTCCAGCATCCTTAGTGGCCTGACGCTGGGAGTCGTTGAAGTAGGCGGGTACCGTA 157272 Query 282464 ATAACGGCATCTGTT 282478 || || |||| |||| Sbjct 157273 ATTACAGCAT-TGTT 157286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740321391198444