Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq67 266 3e-66
seq331 132 5e-26
seq30 105 6e-18
seq134 82.4 7e-11
>seq67
Length=1635559
Score = 266 bits (294), Expect = 3e-66
Identities = 995/1539 (65%), Gaps = 32/1539 (2%)
Strand=Plus/Minus
Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296
||||||| | || ||||| ||||||| | ||||||||| || | ||| || | ||
Sbjct 33393 TCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 33334
Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356
|| | |||||| || | | ||| | |||||||||||||||| ||||| || || |
Sbjct 33333 TGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGG 33274
Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416
||||||||||| || | ||| || ||| | || ||| | || || ||
Sbjct 33273 AGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTT 33214
Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474
|||||| | ||||||| |||| ||| | || ||| | |||||||||||||||
Sbjct 33213 CCTTCAGCAGCTTCCAGTCCAACAGATCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 33156
Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534
|| || || ||| | || ||| ||||||| ||| || ||| || | || ||
Sbjct 33155 GAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 33096
Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594
||| |||||||||||||| || ||| ||||||| || ||||| ||||| |||| ||
Sbjct 33095 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAG 33036
Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654
|||| |||| |||||| |||| ||||| | | | || || || || | ||
Sbjct 33035 CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACC 32976
Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712
|| ||||| | || || |||| ||| ||||||| | | |||| ||| ||
Sbjct 32975 TTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGA-CTTCTC-CGCT-TCGGGCAC 32919
Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATT 148769
|||||| ||| |||||||||||| ||||| || | || | || || || |
Sbjct 32918 TGGATAGAAGTTAATCTCGATGATCTTGTTCAAG-TTTCTGACAATGACTTTGGTCACAG 32860
Query 148770 CTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATA 148826
||| || || ||| || | | ||| || | | ||| | || ||
Sbjct 32859 ATGC-TAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCAATG 32801
Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886
||||| ||||| || || || |||||| | | |||| || ||||| || | |||
Sbjct 32800 GAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAG 32741
Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946
|| ||||||| |||||| ||||| |||| || |||||||| | |||||| |||||
Sbjct 32740 AGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCT 32681
Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGG 149006
||||||||||||||||| || ||||| ||| | || | ||| | ||
Sbjct 32680 TTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACACC 32621
Query 149007 TCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGC 149066
| ||| || ||| ||| | | ||||||| ||| ||| |||| || ||| |
Sbjct 32620 TGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC 32561
Query 149067 TCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGAC 149126
|| ||| |||| || | || ||||| || ||||| |||| | || ||||| || |||
Sbjct 32560 TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGAC 32501
Query 149127 CACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATG 149186
|| | || | ||| | |||||| |||| || || | ||| || ||||| |
Sbjct 32500 CAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAA 32441
Query 149187 AGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246
||||| | ||| | || || || |||| ||| | || | | ||
Sbjct 32440 AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 32381
Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTGCCGCC 149302
| || |||||||||||| | ||||| |||| || || ||| | ||||||||
Sbjct 32380 ACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG-TTGCCGCC 32322
Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGC 149362
||||||||| | ||| || ||||||| | |||| | ||| || | | || | |
Sbjct 32321 CTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGA 32262
Query 149363 AGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCC 149422
||||||| || | |||| || || | || | | || || ||
Sbjct 32261 GTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGCCACACC 32202
Query 149423 GATGCCGCC-GCCGTACTTTGAGAT--GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479
||| || || |||| |||||||||| || | | | | | ||| ||| |||||||||
Sbjct 32201 GATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTC--GTAGATGCC 32145
Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539
|||||||||||| |||||||| ||||| ||||| | ||| || || ||
Sbjct 32144 TTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 32085
Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599
||||| ||| | || || |||||| || || | |||| || || | |||
Sbjct 32084 ACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 32025
Query 149600 CGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659
| ||| | | ||| ||||| | |||||||| | | || | ||| |||||
Sbjct 32024 GGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCAT 31965
Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCTAGT 149717
||||| ||||| || ||||||||| || || |||| |||| ||| || ||
Sbjct 31964 GTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCG--CTCCAGA 31907
Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756
|||||| |||||||| | |||||| ||||| ||| ||
Sbjct 31906 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCG 31868
>seq331
Length=323222
Score = 132 bits (146), Expect = 5e-26
Identities = 151/200 (76%), Gaps = 2/200 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || ||||| ||| | ||| | | | || || ||||||||||
Sbjct 7731 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 7789
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| |||||||||||| || ||||||||||| || |||||| ||
Sbjct 7790 CGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 7849
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| ||||| ||||||| || || | ||||| ||| |||||||| || |
Sbjct 7850 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGG 7909
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || || || |||||||||
Sbjct 7910 TCTTCACAAAGATCTGCATG 7929
Score = 131 bits (144), Expect = 2e-25
Identities = 150/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| || || || ||| | ||| | | | || || ||||||||||
Sbjct 7503 GGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 7561
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| |||||||||||| || ||||||||||| || |||||| ||
Sbjct 7562 CAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 7621
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| |||||| ||||||| || || | ||||| ||| |||||||| || |
Sbjct 7622 TGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGG 7681
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 7682 TCTTGACAAAGATCTGCAT 7700
Score = 114 bits (126), Expect = 1e-20
Identities = 121/157 (77%), Gaps = 2/157 (1%)
Strand=Plus/Plus
Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565
|| || ||||||||||| || | || |||| ||||||||| || || ||||||||||||
Sbjct 12953 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 13012
Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624
|| ||| ||| | ||| | | ||||| |||||| ||||||| || || | |||||
Sbjct 13013 TC-CTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGAT 13071
Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661
||| ||||| || || || || || ||||||||||||
Sbjct 13072 GGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108
Score = 113 bits (124), Expect = 4e-20
Identities = 135/181 (75%), Gaps = 2/181 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||||||||| ||||| |||||||| ||| | ||| | | | || || || |||||||
Sbjct 11306 GGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGTTGCTTGC 11364
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || | || |||| ||||||||| || || ||||||||||| || |||||| ||
Sbjct 11365 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 11424
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| ||||| | ||||| || || | ||||| ||| ||||||||||| |
Sbjct 11425 TGACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGG 11484
Query 133642 T 133642
|
Sbjct 11485 T 11485
>seq30
Length=3550406
Score = 105 bits (116), Expect = 6e-18
Identities = 91/113 (81%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923
|||||||||||||||| | |||||| |||||| ||||||| ||||| ||||| || |
Sbjct 773352 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 773293
Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCC 148976
||||||| | ||||| || |||||||| ||||||||||| || ||||||
Sbjct 773292 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCC 773240
>seq134
Length=707179
Score = 82.4 bits (90), Expect = 7e-11
Identities = 65/78 (83%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410
|| |||||||||||| || |||||||| ||||| || || ||||||| |||||||| |
Sbjct 318879 CTGGTACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTC 318820
Query 120411 CATAAACTCGAACGGGTT 120428
||| || |||||||||||
Sbjct 318819 CATGAAGTCGAACGGGTT 318802
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483382766868560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |