Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq67 266 3e-66 seq331 132 5e-26 seq30 105 6e-18 seq134 82.4 7e-11 >seq67 Length=1635559 Score = 266 bits (294), Expect = 3e-66 Identities = 995/1539 (65%), Gaps = 32/1539 (2%) Strand=Plus/Minus Query 148237 TCAGGTCATCGATCAGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCA 148296 ||||||| | || ||||| ||||||| | ||||||||| || | ||| || | || Sbjct 33393 TCAGGTCTTTGAGCAGATGAGGATTCACGATCTGAAACTCTCCAGAGAGGACCCTGCGGG 33334 Query 148297 GATACACGTTGCTCGTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCG 148356 || | |||||| || | | ||| | |||||||||||||||| ||||| || || | Sbjct 33333 TGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGG 33274 Query 148357 TTGCCGTGGGCATGTACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGC 148416 ||||||||||| || | ||| || ||| | || ||| | || || || Sbjct 33273 AGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTT 33214 Query 148417 GCTTCAGAGCCGCCCAGTCC--CAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTG 148474 |||||| | ||||||| |||| ||| | || ||| | ||||||||||||||| Sbjct 33213 CCTTCAGCAGCTTCCAGTCCAACAGATCGGTG--GGCGTCTTCTCCCACATGTCGTACTG 33156 Query 148475 CAGAATGCCGCGGCTAGCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGC 148534 || || || ||| | || ||| ||||||| ||| || ||| || | || || Sbjct 33155 GAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGC 33096 Query 148535 CAGTTCGCAGCTCGCCTCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAG 148594 ||| |||||||||||||| || ||| ||||||| || ||||| ||||| |||| || Sbjct 33095 CAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCAG 33036 Query 148595 CAGCGCCGCCGACTCGCTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCC 148654 |||| |||| |||||| |||| ||||| | | | || || || || | || Sbjct 33035 CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAACC 32976 Query 148655 CTGTACGCCCACGCCAATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCGAGC-- 148712 || ||||| | || || |||| ||| ||||||| | | |||| ||| || Sbjct 32975 TTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGA-CTTCTC-CGCT-TCGGGCAC 32919 Query 148713 -GGATAGTGGTTGCGGTCGATGATCTTG-TCAAGATTGCGCACCACCACCTTTGT-AATT 148769 |||||| ||| |||||||||||| ||||| || | || | || || || | Sbjct 32918 TGGATAGAAGTTAATCTCGATGATCTTGTTCAAG-TTTCTGACAATGACTTTGGTCACAG 32860 Query 148770 CTGCGCAGCAATTCAAAATCGTA---CTTGTCATCTACGATGCATCGGTTCACGGCGATA 148826 ||| || || ||| || | | ||| || | | ||| | || || Sbjct 32859 ATGC-TAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTACATGTTGAGCGCAATG 32801 Query 148827 GAGGCTAGATTGCACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCAC 148886 ||||| ||||| || || || |||||| | | |||| || ||||| || | ||| Sbjct 32800 GAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTGCAG 32741 Query 148887 AGATTGCTGCATTTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCC 148946 || ||||||| |||||| ||||| |||| || |||||||| | |||||| ||||| Sbjct 32740 AGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCT 32681 Query 148947 TTGTACAGCATGTACGGTCCGCCAGTTTCCACCTGCGTTTCCACTATGAACCGATGCAGG 149006 ||||||||||||||||| || ||||| ||| | || | ||| | || Sbjct 32680 TTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCACACC 32621 Query 149007 TCCTGCGCGCGCACTTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGC 149066 | ||| || ||| ||| | | ||||||| ||| ||| |||| || ||| | Sbjct 32620 TGCTGAGCCTTCACCACACGCTTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTC 32561 Query 149067 TCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGAC 149126 || ||| |||| || | || ||||| || ||||| |||| | || ||||| || ||| Sbjct 32560 TCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAGAGAC 32501 Query 149127 CACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATG 149186 || | || | ||| | |||||| |||| || || | ||| || ||||| | Sbjct 32500 CAGTCTTGGTTGCTTTCCACTCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAA 32441 Query 149187 AGGTCGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAAT 149246 ||||| | ||| | || || || |||| ||| | || | | || Sbjct 32440 AGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTCTTCTTCAGCTCCAGGAAGTCAAAC 32381 Query 149247 ATGTCCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCC----CTTGCGCTTGCCGCC 149302 | || |||||||||||| | ||||| |||| || || ||| | |||||||| Sbjct 32380 ACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTG-TTGCCGCC 32322 Query 149303 CTGGTCGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGC 149362 ||||||||| | ||| || ||||||| | |||| | ||| || | | || | | Sbjct 32321 CTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGA 32262 Query 149363 AGTGCCGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCC 149422 ||||||| || | |||| || || | || | | || || || Sbjct 32261 GTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGATCTGATGCAGCTGACAGCCACACC 32202 Query 149423 GATGCCGCC-GCCGTACTTTGAGAT--GGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCC 149479 ||| || || |||| |||||||||| || | | | | | ||| ||| ||||||||| Sbjct 32201 GATTCCTCCAGCCG-ACTTTGAGATGAGGGCACACTGCTTCAGAGTGTC--GTAGATGCC 32145 Query 149480 CTCGATGCTGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGT 149539 |||||||||||| |||||||| ||||| ||||| | ||| || || || Sbjct 32144 TTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGT 32085 Query 149540 GCCGGCCGCGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTA 149599 ||||| ||| | || || |||||| || || | |||| || || | ||| Sbjct 32084 ACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTA 32025 Query 149600 CGACTCGAGCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCAT 149659 | ||| | | ||| ||||| | |||||||| | | || | ||| ||||| Sbjct 32024 GGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCAT 31965 Query 149660 ATGCTGCGGTCGCTCCGCCACTTTGTTTCCAATTTTGAGCAAGTAG--CCGTTTTCTAGT 149717 ||||| ||||| || ||||||||| || || |||| |||| ||| || || Sbjct 31964 GTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCG--CTCCAGA 31907 Query 149718 GTCTTGTAGCCAAAGTACTTGTAGTCAAAGTCGCGGCCG 149756 |||||| |||||||| | |||||| ||||| ||| || Sbjct 31906 GTCTTGAAGCCAAAGAAGTTGTAGGAGAAGTCACGGTCG 31868 >seq331 Length=323222 Score = 132 bits (146), Expect = 5e-26 Identities = 151/200 (76%), Gaps = 2/200 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| | ||| | | | || || |||||||||| Sbjct 7731 GGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 7789 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||||||||| || ||||||||||| || |||||| || Sbjct 7790 CGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 7849 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| ||||||| || || | ||||| ||| |||||||| || | Sbjct 7850 TGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTCTTGCCGGTGAGGG 7909 Query 133642 TTTTTACGAAAATCTGCATG 133661 | || || || ||||||||| Sbjct 7910 TCTTCACAAAGATCTGCATG 7929 Score = 131 bits (144), Expect = 2e-25 Identities = 150/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || || || ||| | ||| | | | || || |||||||||| Sbjct 7503 GGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCA-TCTTCCAGCTGCTTGC 7561 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| |||||||||||| || ||||||||||| || |||||| || Sbjct 7562 CAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 7621 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| |||||| ||||||| || || | ||||| ||| |||||||| || | Sbjct 7622 TGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTCTTGCCGGTGAGGG 7681 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 7682 TCTTGACAAAGATCTGCAT 7700 Score = 114 bits (126), Expect = 1e-20 Identities = 121/157 (77%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 || || ||||||||||| || | || |||| ||||||||| || || |||||||||||| Sbjct 12953 TCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTG 13012 Query 133566 TCGGTGATCTTTTG-CTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGAC 133624 || ||| ||| | ||| | | ||||| |||||| ||||||| || || | ||||| Sbjct 13013 TC-CTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACCTCAAGGGTGAT 13071 Query 133625 GGTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCATG 133661 ||| ||||| || || || || || |||||||||||| Sbjct 13072 GGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATG 13108 Score = 113 bits (124), Expect = 4e-20 Identities = 135/181 (75%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| |||||||| ||| | ||| | | | || || || ||||||| Sbjct 11306 GGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCA-TCTTCCAGTTGCTTGC 11364 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | || |||| ||||||||| || || ||||||||||| || |||||| || Sbjct 11365 CGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCCTGGATCTTGGCCT 11424 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | ||||| ||||| | ||||| || || | ||||| ||| ||||||||||| | Sbjct 11425 TGACATTCTCAATAGTGTCACTTGGCTCAACCTCAAGGGTGATGGTCTTGCCGGTCAGGG 11484 Query 133642 T 133642 | Sbjct 11485 T 11485 >seq30 Length=3550406 Score = 105 bits (116), Expect = 6e-18 Identities = 91/113 (81%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 148864 TGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCCCACGTTCTTTTGAT 148923 |||||||||||||||| | |||||| |||||| ||||||| ||||| ||||| || | Sbjct 773352 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 773293 Query 148924 TGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCCAGTTTCC 148976 ||||||| | ||||| || |||||||| ||||||||||| || |||||| Sbjct 773292 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCC 773240 >seq134 Length=707179 Score = 82.4 bits (90), Expect = 7e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 120351 CTTGTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTT 120410 || |||||||||||| || |||||||| ||||| || || ||||||| |||||||| | Sbjct 318879 CTGGTACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTC 318820 Query 120411 CATAAACTCGAACGGGTT 120428 ||| || ||||||||||| Sbjct 318819 CATGAAGTCGAACGGGTT 318802 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483382766868560