Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_025115.1 Length=40002 Score E Sequences producing significant alignments: (Bits) Value seq2742 123 6e-24 >seq2742 Length=6849 Score = 123 bits (136), Expect = 6e-24 Identities = 734/1168 (63%), Gaps = 77/1168 (7%) Strand=Plus/Minus Query 8894 ATGGACATGAACGACGCGGCGAAGTCCGCCCAGCCGGCGTCGAACTCCAGCCGGCCCTTG 8953 || |||| ||||| ||| |||| || | ||| ||||| || | || | || |||| Sbjct 2264 ATCGACAGGAACGCCGCCGCGACCTCGGTCCAACCGGCATCCCATTCGATGCG---CTTG 2208 Query 8954 CT---GATCACGTCGTGCGCCTTGAGCACCAGGGCGGTTTTCACTTCCACGGAATAGGTG 9010 | ||||||||| || ||||||||||||||||| | ||| | |||| | || ||| Sbjct 2207 CCCTGGATCACGTCCTGGGCCTTGAGCACCAGGGCATTCTTCGCCTCCAGGCTGTA-GTG 2149 Query 9011 AAGCCTTCGGCGT---CCGGGCG--GAACTTCTGCACCAGGCGGAACACCGCATCGCCGA 9065 || |||| || ||||| | ||| | | ||||||| ||||||| | | |||| Sbjct 2148 AA----TCGGAGTAGCCCGGGGGAAGAAGTCTTTCACCAGGTCGAACACCCCGTAACCGA 2093 Query 9066 TGCCGGTCCGGTCGATGCCCACGTAGGCGACGTTGTAGCGCTCAGTGACGCGCCGGATGG 9125 |||||| ||||||||| | || ||||||| ||||||| | | ||| Sbjct 2092 CGCCGGTAATGTCGATGCCGATGTGCTGGACGTTGAAGCGCTCGCACAGCTTCTCGATCT 2033 Query 9126 CGCCGGCCTGTTCCTCGTA-GTCGATGCCGCGGAACTGGTGCCGCTCCAGCACGCGGAAC 9184 ||||| | | | | | || | || || | |||| |||||| | |||||| Sbjct 2032 GCTTTGCCTGATGCGTGAACGACG-TCCCCCGCCAGCTGTGCTTCTCCAGGATTCGGAAC 1974 Query 9185 TTGCCGCCCGGCACCAGGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 9244 |||||||||||| |||||||||| Sbjct 1973 TTGCCGCCCGGCTCCAGGGGCGGGGCAACGACAACGCACGTCGCGTCGTCGCGGGTTCGA 1914 Query 9245 NNNTTGGGGTCGTAGCCGACCCACACCGGCCGGTTGCCGAACGGCCGCGGCGCGAACGGC 9304 ||||||| || |||| ||| ||||| |||||| ||||||||||||| | ||| Sbjct 1913 C---TGGGGTCATACCCGAGCCAGACCGGGCGGTTGTCGAACGGCCGCGGGCTGTCCGGG 1857 Query 9305 CGGAAGTCCTCCCATACTTCCCAGGT--GTCCACCATCCCGCGCATGAGCATCGAGAGCG 9362 | |||| ||||| |||| || | | || | | | || | || || ||| Sbjct 1856 TCGTAGTCAGTCCATA-GGCCCAAGTCGGAATAGCAGCGCTC-CAGGTCGGTCAAG-GCG 1800 Query 9363 GAAACACGGACGCGTTGTCGTCGATGAACGCGCACATCAGCAGGTTGGCGAAATCGAGTT 9422 || | | | | || |||||||||| |||||| | ||| | |||| || Sbjct 1799 --AATGCAGCCTGGGTGCTGTCGATGAACTTGCACATGAACAGCTGTTCGAAGCGCTCTT 1742 Query 9423 CGCTGTACTCCAGCCGCAACTGGTCGATGTCGAACAGGTTGCAGCCGCCGCGCAGCGCGT 9482 || |||||||||| ||| | || | |||||||||||||||||||||| | |||| Sbjct 1741 CGTCGTACTCCAGCTGCAGGCGCTCCAGGTCGAACAGGTTGCAGCCGCCGGCGATGGCGT 1682 Query 9483 CCTCTACCGTCACGATCTGGCGCCACTGACCGTCAGCGCA----GC----GCATGCCGTT 9534 | | | ||| | || || ||||||||| ||||| | ||| || ||||| | Sbjct 1681 CTTGAATCGTGATGACCTTGCGCCACTGCCCGTCCGGGCACAACGCGCCGGCATGGATCT 1622 Query 9535 GCGCAGCGCGGTGTGGCTCACGTCGATCTTGACCTGTTTGTCCTTGGCCTTGCCGCGGTT 9594 |||| ||| ||| |||| | | ||| | | ||| | ||||| | | Sbjct 1621 GCGCTTCGC----TGGGCCACG----GCCCGGCCT-TCTTTCC--GCGCTTGCTGTTGCG 1573 Query 9595 GAACAGTGCGCCGGACCAGAACGGGTAGGCCTCATGCG---ACAAGCTGGACGGCGTGGA 9651 |||| |||||| |||| |||| || |||| |||| | |||| |||||||| Sbjct 1572 GAACTCCTCGCCGGTCCAGTACGGATATGCCTGGTGCGTTACCGCGCTG---GGCGTGGA 1516 Query 9652 GAAGTACGTTTGCCGCCAGTGCTTG--TGGATCGCCATGCCGGACGCGACCTTGCGCAGT 9709 |||||| || | ||||| | ||| || ||||| || || ||| | |||| Sbjct 1515 GAAGTAGGTCAGGCGCCACT--TTGCATGCGAGGCCATCGCGCTGGCCACCGTCTGCAGC 1458 Query 9710 TCCTGGAAGCGCGGCACCCAGAAGTACTCGTCGAAGTACAGGTTGCCGTGGTAGCTCTGC 9769 | |||||| || | |||||| ||||||| ||| | || |||||||||||||||| Sbjct 1457 TTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGTAGACGTGGCCGTGGTAGCTCTGC 1398 Query 9770 GCGGTGCGGGCGTTGGTCCCGAGGAAGTACAGCGTCGCCC------------CGTTGGGC 9817 || ||| | ||| ||| ||| || ||| ||||| | ||| | Sbjct 1397 GCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCGCCCACGGCTTGCCGTCTTTGCTC 1338 Query 9818 AACACCATCGGGTCGCCCTTCAGCTCGACGCCGGCTGCGTCCTTCGCGAATTGGATGATG 9877 || | || || | ||| |||||||| || | | ||||| || |||| Sbjct 1337 AAGATGATGGGATTGCCGGACAGCTCGATATCGAACCATTGCGCGGCGAACGCGACGATG 1278 Query 9878 TA-CTGCTTGAAGACGTGCGCCTGTGCCTTGCTGGCCGATAGAAAAATCTGGTTGCGGCC 9936 || |||| ||| || | | ||| || ||| || || || |||||||||||| || Sbjct 1277 TAGCTGC-GGAACACTTCGGACTGGGCGCGGCTCGCGGACAGGAAAATCTGGTTGTCCCC 1219 Query 9937 AGTGGTCAGC---GCGTCGATGAACGCCTCGCGTGCGAAGTACCACGTCGCGCCGATCTG 9993 ||||||| ||||| |||||||| ||| |||||||| | ||| |||||||| Sbjct 1218 ---GGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAGTAGTAGGTCAGCCCGATCTG 1162 Query 9994 CCGGCTCTTGAGCAGGTTGCGGATGCGC 10021 || ||| || | | |||||| ||| Sbjct 1161 GCGCGACTTCAGGATATGGCGGATCCGC 1134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127875241730192