Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq67 199 4e-46 seq30 86.0 6e-12 >seq67 Length=1635559 Score = 199 bits (220), Expect = 4e-46 Identities = 878/1364 (64%), Gaps = 52/1364 (4%) Strand=Plus/Minus Query 147042 GATGTTGTCCTTCAA-AGTTTGCCAGTCCCACA--TCGACGAGGGCGTCACGTTCCACAT 147098 ||| || ||||||| || || ||||||| ||| ||| | ||||||| | |||||| Sbjct 33221 GATCTTTTCCTTCAGCAGCTT-CCAGTCCAACAGATCG--GTGGGCGTCTTCTCCCACAT 33165 Query 147099 GTCGTACTGGAGCA-CTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGT 147157 |||||||||||| | | ||| | ||| | ||| ||| || |||| |||| ||| Sbjct 33164 GTCGTACTGGAGGATCCCCTTG-CTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGA 33106 Query 147158 CGCGCTGCG-CCAATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATT 147216 || | ||| ||| || ||||| ||||| || || | ||||| ||||| || |||| Sbjct 33105 -GCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATT 33047 Query 147217 TGTTTGTTTAGGACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCA 147276 || |||| || | ||| || ||| || | || ||||| || | |||||| Sbjct 33046 TGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCA 32987 Query 147277 TCGGCCAAACCCTGGATACCGACGCCGATAGGTC---GATGCTTTTCGT--TGCTGCGCT 147331 || |||||||| || | |||| || || || | || |||| | | | || |||| Sbjct 32986 TCCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCT 32927 Query 147332 TCGCGCTCGCTATGGGATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAA 147391 ||| || | |||||| ||| || || |||||||| | ||| | || | | Sbjct 32926 TCGGGCACT-----GGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGA 32872 Query 147392 CTTTAGTTATTGTTTTGAGTTTCTCGAAATCATAAGTCCCGTCTTCGAC-ACGTACGCAT 147450 |||| || | | | ||||| | || ||| |||||| || | |||||| || Sbjct 32871 CTTTGGTCACAGATGCTAGTTTTTTAAAGTCAAAAGTCCGCTCAGGGGTGACGTAC--AT 32814 Query 147451 TGGTTCACGGCGATAGACGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGC 147510 ||| | || || || |||||||| ||||| || ||| ||| || | |||| | Sbjct 32813 --GTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCA 32756 Query 147511 ACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTC 147570 |||||||| | ||| |||||||||| ||| || |||| ||| ||||| ||||| || Sbjct 32755 ACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTT 32696 Query 147571 CGATTGCACGCGTCTTTGAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACG 147630 || ||||| ||||||||| | ||||||||||| ||||| || || | |||| | Sbjct 32695 CGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATG 32636 Query 147631 AT--------AAACCTATGCAGGTCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGT 147682 || | ||| ||| | ||| | | ||| |||| || | ||||| | Sbjct 32635 ATGGCGTGCCACACC--TGCTGAGCCTTCAC---CACACGCT--TGA-CCCTCCCCTCCT 32584 Query 147683 TTTCGTACCGCTCGTACAACCGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGAC 147742 | || || ||| | | ||||||||| || || | || ||| | || ||||||| Sbjct 32583 TCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGAC 32524 Query 147743 ACTGATGCGGACACATCAGCGACCACATGTCGTCCGCGTT-AACGCGTCGCATAAACAGA 147801 ||| || ||||||||||| ||||| | | | || || || | ||| |||| Sbjct 32523 ACTCATTGGGACACATCAGAGACCA-GTCTTGGTTGCTTTCCACTCTCTTCATGAACAAG 32465 Query 147802 TCCGGCACCCACAGCGCGTACATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGT 147859 || || | |||||| ||||| | ||| || | || || ||| ||||| || ||| Sbjct 32464 TCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGC--TCCTCCTTTCCTGTGT 32407 Query 147860 TGCGTTTCAAATTAAGCACGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCA 147919 | |||| | || | | | | | ||| |||||| || || | ||| | ||| | Sbjct 32406 TCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGA 32347 Query 147920 GCGCACC---TTTACGCTTTCCGCCCTGGTCGACATGGCGCACCATGTTGTTAAACACGC 147976 || || | | || |||||||||||||||| ||| || ||||||| | || | Sbjct 32346 AGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTC 32287 Query 147977 GCACCATGGGTTCCAGGCCGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGG 148036 || |||||| | | ||| | | ||||||| ||| || | ||| || | Sbjct 32286 TCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTG 32227 Query 148037 CTCGCACTTCGTGCACGTTAACGCCAATGCCGCC-GCCGTACTTTGATATGGCAGCGCAA 148095 || | | || || || || || || |||| ||||||| ||| || || Sbjct 32226 ATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCG-ACTTTGAGATGAGGGCACAC 32168 Query 148096 TCGCCCAATGTCGTGTAGATGCCGTCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACAC 148155 | || || ||||||||| ||||||||||||| || | | | |||| || || Sbjct 32167 TGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAG 32108 Query 148156 GAACACATTTGCGGAATCCGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAAC 148215 ||| || || | || || || ||| || || || ||||| || ||| Sbjct 32107 CTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC 32048 Query 148216 AATTTTTGACTCATCATGCGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATG 148275 | || | || || | || |||||||| || | |||||||| | ||| ||| Sbjct 32047 CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATG 31988 Query 148276 CCCAGCGCGACGCGCATGAGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTG 148335 || | | || | ||||||||||||||| ||||||||||| |||| ||||||||| Sbjct 31987 CCAACAGAAACCCTCATGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTC 31928 Query 148336 AGAAGATATCCATTTTCGAGGGTTTTGTAACCAAAGTACTTGTA 148379 || || || || || || ||| | |||||| | ||||| Sbjct 31927 AGCAGGTAGGACCGCTCCAGAGTCTTGAAGCCAAAGAAGTTGTA 31884 >seq30 Length=3550406 Score = 86.0 bits (94), Expect = 6e-12 Identities = 79/100 (79%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 147503 TGTACTGCACGATTTCGGCGCACAGGTTGCTGCATTTTATGACTCCCAAATTTTGCTGAT 147562 |||||| ||||| || | ||||||||||||| |||| ||| |||| || ||||| | Sbjct 773352 TGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGT 773293 Query 147563 TGCTTTTCCGATTGCACGCGTCTTTGAAGAGCATGTACGG 147602 |||| |||| |||||| || || ||| | ||||||||||| Sbjct 773292 TGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGG 773253 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476573702613840