Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq67 140 3e-28 seq331 100 3e-16 seq30 84.2 2e-11 >seq67 Length=1635559 Score = 140 bits (154), Expect = 3e-28 Identities = 896/1427 (63%), Gaps = 26/1427 (2%) Strand=Plus/Plus Query 7524 CTACTTGTTGAAAATCAACGGCGAATGCGCGGAACGAATTCAACACATGCTGTTGCGCGT 7583 |||| || |||| ||||||||| || || |||||| || |||||||| || | || Sbjct 31919 CTACCTGCTGAAGATCAACGGCAAAGTGGCCGAACGACCCCAGCACATGCTCATGAGGGT 31978 Query 7584 GGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTGGAAACGTACCAAATGATGTC 7643 | || ||||| ||| | ||||| ||||| ||| | || || ||| | || |||| Sbjct 31979 TTCTGTTGGCATCCACAGAACGGACATCGACGCAGCCATTGAGACCTACAACCTGCTGTC 32038 Query 7644 TTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCCGCGGGCACAAACGCGCCTCA 7703 ||| ||| || ||||| ||||| || | || || || || ||| |||||| Sbjct 32039 GGAGAAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCA 32098 Query 7704 ATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAGCATCGACGGCATTTACAACAC 7763 ||||| || || |||| ||||| || ||||||||||| ||||| ||| |||| Sbjct 32099 GCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACAC 32158 Query 7764 GCTGCGCGATTGCGCCAATATTTCCAAATACGGC-GGCGGAATAGGTCTGAACGTAAACG 7822 ||| | || ||| || | |||| |||| || ||||| ||| || || | | Sbjct 32159 TCTGAAGCAGTGTGCCCTCATCT-CAAAGTCGGCTGGAGGAATCGGTGTGGCTGTCAGCT 32217 Query 7823 ACGTGCGCGCCAACGGTAGCCGCATCGTGTCCACCAACGGAAAAGCCAGCGGTTTAGAGC 7882 | | | | | || ||| ||| | ||| ||||| || | | ||| |||| | Sbjct 32218 GCATCAGATCAACAGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCC 32277 Query 7883 CCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAGACCAGGGGGGAAAGCGCAAA- 7941 ||||| || | || | ||| ||| ||| ||| |||| |||||||| || || |||| Sbjct 32278 CCATGCTGAGAGTTTACAACAACACGGCGCGTTATGTCGACCAGGGCGGCAA---CAAAA 32334 Query 7942 -----GGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGGACATTTACGCAGTGCTAA 7996 || ||| ||||| || |||||||||||||| || | | | | || Sbjct 32335 GACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGG 32394 Query 7997 ATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGC--GCGATCTATTCTTCGGATT 8054 | ||| |||| || || | |||| || || | || || |||| || | Sbjct 32395 AGCTGAAGAAGAACACAGGAAAGGAGG--AGCAGAGGGCCAGAGACCTTTTCTACGCCCT 32452 Query 8055 GTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCACAATGGTCGCTCATGTG 8114 |||| | || || |||| |||| | | || | | || | | ||||| || ||||| Sbjct 32453 GTGGATCCCTGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTG 32512 Query 8115 CCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAATTTGAACAATTGTACAA 8174 ||| || || || | | | || ||| | ||||| | | |||| Sbjct 32513 TCCCAATGAGTGTCCCGGGCTGGACGAGTGTTGGGGTGAGGAGTTTGAGAAGCTCTACAC 32572 Query 8175 ACAATACGAACACGACGGCGCGTACGTGCGGCAAGTGAAAGCGCGCGACCTGCACCGCGC 8234 ||| || | || || | | ||| ||||| || | | || | ||| Sbjct 32573 TTCATATGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGC 32632 Query 8235 CATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTGCAA 8294 ||| || || | || | |||||||||| |||||||||||||||||||||||| ||||| Sbjct 32633 CATCATTGAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAA 32692 Query 8295 CGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGAAAT 8354 | || ||||| || || ||||||| || ||||||| || ||| | ||||| Sbjct 32693 CCGAAAGAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAAT 32752 Query 8355 TGTACAGTACAGC-GCGCCCGACGAAGTGGCCGTTTGCAATCTAGCGTCGGTGTGTTTAA 8413 || | |||| | ||| ||| || || || || || ||||| || || | | | Sbjct 32753 CGTTGAATACACCAGCG-ACGATGAGGTAGCGGTCTGTAATCTGGCCTCCATTGCGCTCA 32811 Query 8414 ACGCGTTCGTTGATCGACGCTCA-AACACTTACGACTTTGAACAATTGAAAAACGCCGTG 8472 || || || || | || | |||| |||||| || || | | | | | Sbjct 32812 ACATGTACG----TCACCCCTGAGCGGACTTTTGACTTTAAAAAACT-AGCATCTGTGAC 32866 Query 8473 C-AAGTGACGGTACGCAATTTAGATCGCATCATTGATGTCAATTTTTATCCCTTGGAAGA 8531 | |||| | || | || || | ||||| || | || || ||||| || || Sbjct 32867 CAAAGTCATTGTCAGAAACTTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCCGA 32926 Query 8532 AGCGCGCGTA-TCGAACATGCGCCACAGACCCGTTGGCGTGGGCGTGCAAGGTCTGGCCG 8590 |||| | | | || |||| ||| ||||| || | || | ||||| |||||| |||| | Sbjct 32927 AGCG-GAGAAGTCCAACAAGCGTCACAGGCCAATAGGAATCGGCGTTCAAGGTTTGGCGG 32985 Query 8591 ACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGAAGCGCGCATGCTCAACATAA 8650 | || || | || |||| ||| | ||||||| || |||| |||| ||||| Sbjct 32986 ATGCCTTCATCCTGATGCGTTACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACATCC 33045 Query 8651 AAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAGCTGTCAACTTGCCCGAGAAT 8710 |||| || || | || |||| ||| | || || ||||| | || ||| || Sbjct 33046 AAATCTTTGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGC 33105 Query 8711 TGGGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGCCGCGGAATATTGCAATACGACA 8770 | ||| | ||||| |||||| ||| || | |||| || || | || ||||||| Sbjct 33106 TCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAGCAAGGGGATCCTCCAGTACGACA 33165 Query 8771 TGTGGAATGTCACGCCCACCTCTTTGTGGAATTGGAGCGATTTGAAACGCAAAATTGCTC 8830 ||||| | ||||||||| | ||| | | |||| |||| || || || Sbjct 33166 TGTGGGAGAAGACGCCCACCGATCTGTTGGACTGGAAGCTGCTGAAGGAAAAGATCGCCA 33225 Query 8831 AATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTACATGCCCACCGCCACGACTGCTCAAA 8890 || ||| || | || || || |||| |||||||| ||| | || || || | Sbjct 33226 AACACGGCGTGAGGAACAGCCTACTGCTGGCCCCGATGCCCACGGCCTCCACAGCACAGA 33285 Query 8891 TAATGGGAAACAACGAATCCTTTGAGCCGTTCACCAACAACGTGTAC 8937 | |||| |||||||| || | || | | ||||| |||| | ||| Sbjct 33286 TCCTGGGCAACAACGAGTCTATCGAAGCCTACACCAGCAACATCTAC 33332 >seq331 Length=323222 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || ||||| || ||||| ||||| || |||||||||||| Sbjct 7702 CCGCCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAG 7761 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| ||||| || Sbjct 7762 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGA 7821 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||||| || | ||||| | || || Sbjct 7822 ATGCCTTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACC 7881 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTT 134716 || || || ||||| || ||||| | || || || || || ||||| || Sbjct 7882 TCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCATGTT 7931 >seq30 Length=3550406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||||| ||||| | ||| | ||||| || | ||||||||||| ||||| || || || Sbjct 773219 CGCCATCATCGAGTCTCAGACGGAAACGGGAACCCCGTACATGCTTTACAAGGATGCCTG 773278 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 ||| | || ||||| || ||| |||||||||| | |||||| |||||| | || Sbjct 773279 CAATGGGAAGAGCAACCAGCAGAACCTGGGCACCATCAAATCCAGCAACCTGTGCACAGA 773338 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 773339 GATCGTAGAGTACA 773352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505358637780880