Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_027368.1
Length=33828
Score E
Sequences producing significant alignments: (Bits) Value
seq2742 145 2e-30
>seq2742
Length=6849
Score = 145 bits (160), Expect = 2e-30
Identities = 426/648 (66%), Gaps = 29/648 (4%)
Strand=Plus/Minus
Query 15250 TGCACATAAACAAGTTGTTGAAATCGGT-TTCGTTGTACTCTTCGCGCAGCTCGTCGATG 15308
||||||| |||| | |||| || || | ||||| |||||| |||| || | |
Sbjct 1771 TGCACATGAACA-GCTGTTCGAAGCGCTCTTCGTCGTACTCCAGCTGCAGGCGCTCCAGG 1713
Query 15309 TCGAACAGGTCACAGCCACCCTTGGCGGCATCTTCAATCGTGACCACATAACGCCACTGC 15368
|||||||||| ||||| || | ||| |||| |||||||| || | |||||||||
Sbjct 1712 TCGAACAGGTTGCAGCCGCCGGCGATGGCGTCTTGAATCGTGATGACCTTGCGCCACTGC 1653
Query 15369 TTATCCGGGCA-AAGGCGACCGCCATCGCGCAGTTCATCAAACGTTGGGAA----CTCGA 15423
|||||||| || ||| ||| ||| | | | | || | |||| | ||
Sbjct 1652 CCGTCCGGGCACAACGCG-CCGGCATGGATCTGCGCTTC----GCTGGGCCACGGCCCGG 1598
Query 15424 TGTTCTTGCGTCGTTCGCTGCCATCGCGCCATTTGTCCCCAGTCCAGAACGGGTAAGCGG 15483
||||| | || | |||| | ||| | | || || |||||| |||| || ||
Sbjct 1597 CCTTCTTTCCGCGCTTGCTG---TTGCGGAACTCCTCGCCGGTCCAGTACGGATATGCCT 1541
Query 15484 GGTGCATTTTGGTTGAAGGGGTGGAAAAGTACGTCTTGCGCCACTTCTTATGCGTGGCCA 15543
||||| || | || ||||| ||||| ||| ||||||||| ||||| |||||
Sbjct 1540 GGTGCGTTACCGCGCTGGGCGTGGAGAAGTAGGTCAGGCGCCACTTTGCATGCGAGGCCA 1481
Query 15544 TCGCTGAGGCGACTTTGTTCAGCTCGTCAAACTTGCCGATCCAGAAATACTCATCCACAT 15603
|||| ||| || | | ||||| | || ||| ||||||||| || || | |
Sbjct 1480 TCGCGCTGGCCACCGTCTGCAGCTTCTGGAAATTGGGGATCCAGAACACTTCGTCGATGT 1421
Query 15604 ACACATGGCCGTGGTAACTCTGCGCTGTTTTGCCATTGGTAGACAGGAAATGCAGCTCAG 15663
| || ||||||||||| |||||||| || |||| || || || || || |||| || |
Sbjct 1420 AGACGTGGCCGTGGTAGCTCTGCGCCGTGTTGCTGTTCGTCGAGAGAAACCGCAGTTCCG 1361
Query 15664 C---------GCC--ATTAG--AAAGCGTCATCGGGTTGCCGGAAAGTTCCAGCCCCAAA 15710
| ||| || | ||| | || || |||||||| || || | | ||
Sbjct 1360 CCCACGGCTTGCCGTCTTTGCTCAAG-ATGATGGGATTGCCGGACAGCTCGATATCGAAC 1302
Query 15711 AACTCTTTGGCGAGCGAAACAATATAGCGGCGGAACACTTCGGCCTGAGCGCGTGAAGCA 15770
| | ||||| || || || |||| |||||||||||||| ||| ||||| ||
Sbjct 1301 CATTGCGCGGCGAACGCGACGATGTAGCTGCGGAACACTTCGGACTGGGCGCGGCTCGCG 1242
Query 15771 GAGAGGAAAATCTGGTTGTCGCCAGTGAGAATCGCATTCTCTAGCGCTTCGCCACTGAAA 15830
|| ||||||||||||||||| || || || | || | | | ||||||| | |||
Sbjct 1241 GACAGGAAAATCTGGTTGTCCCCGGTCAGCACTGCGTCCATGAACGCTTCGGCGGCGAAG 1182
Query 15831 TAGTAAGTTGCCCCTACTTGGCGCGATTTAAGAATGTTTCGAATACGC 15878
||||| || ||| | |||||||| || || || | || || |||
Sbjct 1181 TAGTAGGTCAGCCCGATCTGGCGCGACTTCAGGATATGGCGGATCCGC 1134
Score = 95.1 bits (104), Expect = 3e-15
Identities = 149/208 (72%), Gaps = 4/208 (2%)
Strand=Plus/Minus
Query 13813 TCGCCAACGGGTATCAGTTGAAT-GCCTTTCTCTTTCCCGTTCGGGATGTTCACAAACAT 13871
||||| || || || | ||| || |||||| || ||| |||||||| || |||||
Sbjct 3192 TCGCCGACCGGAATTATTTGGATCGCCTTT-TCAGAGCCGCCTGGGATGTTGACGAACAT 3134
Query 13872 ACTGCGGAAGTTACCAA-TCCCTTTCGAGCTGGCGATCTTGTTTTTCAGTGCCTCTTCAT 13930
| |||||||||||| | |||||| | || | | |||| | |||||| ||||||||
Sbjct 3133 AGAGCGGAAGTTACCGACTCCCTTACTTGCCG-CAATCTGCTGTTTCAGATTCTCTTCAT 3075
Query 13931 CTTCTTCACTCAAGTTCGGGTCGGTTGAGTAGAAAATAAACCCCATATGCGCACCGTTCA 13990
||||||| ||| ||| |||| | | ||||| | | | || ||| || |||||
Sbjct 3074 CTTCTTCCGACAAATTCTCGTCGTTCGTATAGAACACATATCCGGCATGGGCGCCGTTAC 3015
Query 13991 GGTAATAACGGCGGCGAAACAGCGTCGC 14018
||| || || ||||||||||| |||||
Sbjct 3014 TGTAGTAGCGCCGGCGAAACAGTGTCGC 2987
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 108119918378120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |