Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq2174 104 2e-17 seq328 87.8 1e-12 >seq2174 Length=19132 Score = 104 bits (114), Expect = 2e-17 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 77433 CACCATTGATGGTGAACATGCTGTCTGTGTAGACGACCAGCTTCTTGATTTTGTTCTCCT 77492 |||| |||||||||||| ||||||| ||||||| |||||||||||| || || ||||| | Sbjct 8628 CACCGTTGATGGTGAACTTGCTGTCCGTGTAGAGGACCAGCTTCTTTATGTTATTCTCTT 8569 Query 77493 GAGCTTGTTGCAGTGCTTTGGATGCAGCCTGG 77524 ||||||| ||| |||||| | ||||||||| Sbjct 8568 TGGCTTGTTCCAGCGCTTTGCAGGCAGCCTGG 8537 Score = 96.9 bits (106), Expect = 3e-15 Identities = 101/130 (78%), Gaps = 2/130 (2%) Strand=Plus/Minus Query 77308 CAGCCAGACAACCTCCAGCTCCAAATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTT 77367 || |||||| ||||||| ||| || || ||||||||||| |||||| || ||||| Sbjct 8862 CACCCAGACCACCTCCACCTCTGCGTTCAGCCCGTCCAGCTTCACAAAGTCTTCTTTGTT 8803 Query 77368 GACAA-CTGACCCTCCGCCATGCAGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACT 77426 || | |||||| ||| | |||||||||||||||| |||||||| |||| ||||| Sbjct 8802 GATGATCTGACC-TCCAGATTTCAGCCTCCAGCCGTTCAGCTTCCAGGTCTTCACCCAGC 8744 Query 77427 TAGTCACACC 77436 | |||||||| Sbjct 8743 TGGTCACACC 8734 >seq328 Length=324763 Score = 87.8 bits (96), Expect = 1e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 87328 CCTGCTCCCAGTTTACTAAAATCTTTCTTAGATTGAAATGTATAGACTGTCAAGCCAGCA 87387 |||||||||| ||| || || ||| |||| || || || || ||| |||||| |||||| Sbjct 172450 CCTGCTCCCATTTTGCTGAAGTCTCTCTTGGACTGGAAGGTGTAGGCTGTCAGTCCAGCA 172509 Query 87388 AACACAGCACATGTTaaaaaaaGCGATTGTAGTATGGTGGAGTATTCATAGAAGGTCA 87445 || || ||||| || | || | | ||| || | ||||||||||||||||||||| Sbjct 172510 AATACTGCACAGGTCAGGAACAAGGCTTGCAGCACAATGGAGTATTCATAGAAGGTCA 172567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397425511895470