Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq67 239 6e-58 seq508 89.7 6e-13 seq30 86.0 8e-12 >seq67 Length=1635559 Score = 239 bits (264), Expect = 6e-58 Identities = 965/1491 (65%), Gaps = 42/1491 (3%) Strand=Plus/Minus Query 110614 CTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGTTGAC 110673 |||||| |||| | ||| || || ||| | | ||||| |||| || || || || Sbjct 33425 CTTCATCTCCTCGTTCCACAGCCCCCTCTCCGTCAGGTCTTTGAGCAGATGAGGATTCAC 33366 Query 110674 AATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTTCAAA 110733 || |||||| || | |||| || | ||||||||| | ||||| | ||| | Sbjct 33365 GATCTGAAACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGAT 33306 Query 110734 GCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCAAAAG 110793 | || || || |||| ||| ||||| |||||||| || ||||| || |||| || || Sbjct 33305 AGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAG 33246 Query 110794 ACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGTTGAG 110853 ||||| | | || | | ||| |||||| || | | |||||| | || Sbjct 33245 GCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCAACA-GAT 33187 Query 110854 C--TTGGTTTCACCTTCCCACATGTCAAACTGAAGCA-CCCCTTGG-GACGCGGGAGAAC 110909 | | || || || |||||||||| |||| || | ||||||| ||| ||||| | Sbjct 33186 CGGTGGGCGTCTTCT-CCCACATGTCGTACTGGAGGATCCCCTTGCTGACC--GGAGAGC 33130 Query 110910 CCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAGGGATG 110969 | || | || || |||| || | | | |||| || |||||||||||||||| | Sbjct 33129 CTTCGTACGTCTCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGG 33070 Query 110970 CGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATCAAATG 111029 ||| || ||||| |||||||| | |||| | || || || ||||| | Sbjct 33069 CGTAGTAGATGGTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACG 33010 Query 111030 CGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGGTCTGT 111089 ||| || || || || ||||||| | ||||||||| || | || || || |||| Sbjct 33009 GGTAACGCATCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGT 32950 Query 111090 GTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCTGTCAATGACTCGGT 111149 | ||| | || ||||| ||| || ||||| || || | || |||| || Sbjct 32949 GACGCTTGTTGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGT 32890 Query 111150 TTAGATTTTTGGTAACAATCTTTGTGATTTCA--TGA-AGTTTTTCATAATCAAAAGTGC 111206 | | ||| || ||||| | || | || || ||||||| | | |||||||| | Sbjct 32889 TCAAGTTTCTG---ACAATGACTTTGGTCACAGATGCTAGTTTTTTAAAGTCAAAAGTCC 32833 Query 111207 GAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCT 111266 | ||| |||| ||| | || || || || |||| ||| || || || || Sbjct 32832 G---CTCAGGGGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCT 32776 Query 111267 CATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCA 111326 |||| | ||||| || | |||||||| || | |||| || || || || |||| Sbjct 32775 CATCGTCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCA 32716 Query 111327 AATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCG 111386 ||||| ||||| ||||| |||||| || || ||||| |||||||| ||||| || | Sbjct 32715 GATTCTGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGG 32656 Query 111387 TCTCCGTCTGTGATTTGAGAATAGCCTTCCAAACAT-CGGCGGCTGGTACAATGGCGTTG 111445 | || ||||| || | | || || | ||| || | | | | || || || ||| Sbjct 32655 TTTCTGTCTGGGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGC-TTG 32597 Query 111446 GCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCC-ACCGCGTC 111504 ||| |||||| ||| || |||||||| ||||||||||||||| | | | || Sbjct 32596 ACCCTCCCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCAACAC-TC 32538 Query 111505 GGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA---TTGACCACCTTCCTCAAC 111561 | || || || || | ||||| | |||||||| ||| | |||| || Sbjct 32537 GTCCAGCCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCC---AC 32481 Query 111562 CCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTC 111621 | ||||||||| | ||| || |||||||||| | || || ||||| || ||| Sbjct 32480 TCTCTTCATGAACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTC 32421 Query 111622 TTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCT 111680 || | ||| ||| || | | ||| ||||| || | | ||| |||||| |||| Sbjct 32420 CTCCTTTCCTGTGTTCT-TCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCT 32362 Query 111681 CAAGATAGACTGCGATAGATCC----CTTTCGACGCCCAGCTTGATTTACATAGCGCGCT 111736 | || || | |||| | ||| |||| | ||| || | | ||||| ||||| Sbjct 32361 CCAGGTACATGGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGG-TCGACATAACGCGCC 32303 Query 111737 GTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGA 111796 ||| ||| | || | ||||| || | | || | ||| | || ||||| || | Sbjct 32302 GTGTTGTTGTAAACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCA 32243 Query 111797 ATACGAGATTTAT-TGGCTCTCA--CATCATGGATGTGCATCCCAATACCCCCAGCCCAC 111853 || || | | | | ||| | || | || || || || || |||||| || Sbjct 32242 ATGT-AGCTCCCTGTTGATCTGATGCAGCT--GACAGCCACACCGATTCCTCCAGCCGAC 32186 Query 111854 TTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTG 111913 |||||||| | ||||||| | | ||||| | ||||| || | ||| ||| ||||| Sbjct 32185 TTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTC 32126 Query 111914 TTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTT 111973 |||||| |||||||| ||||||| ||| || || ||||| ||||||||||| || Sbjct 32125 ATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTA 32066 Query 111974 GGTGTTGCGTGAATGAACATACCT-TGGGACATCTTGTCGTATGTCTCCAAGACAGAATC 112032 || | ||||| ||||| || | | |||| | || ||| ||||| | | | | || Sbjct 32065 GGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTC 32007 Query 112033 AATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGAACATGTACTGTGG 112083 ||||| | ||||||||| | | |||| ||||| ||||| ||| || Sbjct 32006 GATGTCCGTTCTGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGG 31956 >seq508 Length=211378 Score = 89.7 bits (98), Expect = 6e-13 Identities = 85/109 (78%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 122678 CCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTCT 122737 ||||||| | | ||| || ||||| |||||| ||||| ||||| || || | ||||| Sbjct 169635 CCTCATCCCTGCTAATCAGCTCATTGGAGAAGGTAAGACCAGGCATTAGCCCTCTCTTCT 169576 Query 122738 TCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCAC 122786 | | |||||| || || |||||| || |||||||||||||||||||| Sbjct 169575 TGAGCCAATAGATGGCAGCGAATGAGCCTGAGAAGAAGATACCCTCCAC 169527 >seq30 Length=3550406 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 111278 GTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGG 111337 |||||||||| || ||||| || | |||| || || || |||| |||| ||| Sbjct 773353 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGG 773294 Query 111338 TTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGT 111397 || |||||| ||||| ||||||||||| |||||||| || || ||||| |||||||| Sbjct 773293 TTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGA 773234 Query 111398 GATTTGAGAATAGCCTTCCA 111417 || | || || || | ||| Sbjct 773233 GACTCGATGATGGCGTACCA 773214 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627982589582400