Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq67 219 5e-52
seq30 95.1 1e-14
>seq67
Length=1635559
Score = 219 bits (242), Expect = 5e-52
Identities = 939/1459 (64%), Gaps = 40/1459 (3%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | || | |||| ||||| |||| ||| || |||||||||
Sbjct 33331 TAGATGTTGCTGGTGTAGGCTTCGATAGACTCGTTGTTGCCCAGGATCTGTGCTGTGGAG 33272
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCC 118301
|| |||||||| || |||| || |||||||| | | || | || || ||||
Sbjct 33271 GCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTCCTCACGCCGTGTTTGGCGATCTTTTCC 33212
Query 118302 TTGAG-AGCGTCCCAGTCGTAGTTGAGCTTTGT-CTCCCCCTGCCACATATCAAACTGGA 118359
|| || ||| ||| |||| | || | || | | || |||||| || ||||||
Sbjct 33211 TTCAGCAGCTTCC-AGTCCAACA-GATCGGTGGGCGTCTTCTCCCACATGTCGTACTGGA 33154
Query 118360 GGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCC---CTCAACCTCCG 118416
|||| || | | | || || || || | ||||| || ||||| |||| | |
Sbjct 33153 GGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTCTCGTAGGGGCCGAGCTCAGCG---G 33097
Query 118417 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCA 118476
||| ||| |||||||||| ||||| |||| || || || ||||| || | ||||
Sbjct 33096 CCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATGGTCTCAAAGATTTGGATGTTCA 33037
Query 118477 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGAC 118536
|| |||||| | ||||||| | || || || || ||||||| | ||
Sbjct 33036 GCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCATCAGGATGAAGGCATCCGCCAAAC 32977
Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGG 118596
|||| || |||| || ||||| | || | | | || |||||| || ||| |
Sbjct 32976 CTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGTTGGACTTCTCCGCTTCGGGCACTG 32917
Query 118597 GATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCAT 118656
|||| || || | ||||| | | | || | ||| || | || || || | ||
Sbjct 32916 GATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTCTGACAATGACTTTGGTCA---CA- 32861
Query 118657 GAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCG 118712
|| ||| ||| ||| |||||| | || ||| |||| ||| | || ||
Sbjct 32860 GATGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCAGGGGTGACGTACATGTTGAGCGCA 32804
Query 118713 ATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTG 118772
|| || ||||||||||| || | |||||| | ||||| || | ||||| |||
Sbjct 32803 ATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCTGGTGTATTCAACGATTTCTGTG 32744
Query 118773 CACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCA 118832
|| | ||| || || || ||||||| |||| || || |||| ||| || ||
Sbjct 32743 CAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTGGTTGCTCTTTCGGTTGCAGGCG 32684
Query 118833 TCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAG 118892
|| ||||| |||||||| ||||| || || || || ||||||| | || || | |||
Sbjct 32683 TCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTGGGACTCAATGATGGCGTGCCAC 32624
Query 118893 ACATCGGCAGCTGGCAC-AGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAG 118951
|| | ||| ||| | || ||| | | |||||| | ||| || ||||||||
Sbjct 32623 ACCTGCTGAGCCTTCACCACACGC-TTGACCCTCCCCTCCTTCTCATATGAAGTGTAGAG 32565
Query 118952 GGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAG 119011
|||||||| |||||| ||| ||||| || || || || || | ||
Sbjct 32564 CTTCTCAAACTCCTCACCCCAACACTCGTCCAGCCCGGGACACTCATTGGGACACATCAG 32505
Query 119012 AGACCA---TTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGC 119068
|||||| ||| | ||| || | ||||||||| | ||| |||||||| || ||
Sbjct 32504 AGACCAGTCTTGGTTGCTTTCC---ACTCTCTTCATGAACAAGTCAGGGATCCACAGGGC 32448
Query 119069 CGAGAAGAGATCCC-GACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 119127
|||| || || | | | ||| || | | || || || || ||||| |
Sbjct 32447 GTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTG-TTCTTCTTCAGCTCCAGGA 32389
Query 119128 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCC----CTTACGA 119183
|||| | | ||| ||||||||| |||||||||| |||| | || ||| |
Sbjct 32388 AGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGGCGAAGGCTCCGGGTCTTTTGT 32329
Query 119184 CGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATA 119243
| || |||||| ||||| | ||| ||| ||| | || | ||||| || | |
Sbjct 32328 TG-CCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAAACTCTCAGCATGGGGACTAAC 32270
Query 119244 CCATCGGATTGGCCATTTGTCCCCCGAATAC-GAGACTTATTGGCTCTGACATCGTGGAT 119302
|| | || | ||| ||||| || ||| | | | ||| ||||| | ||
Sbjct 32269 CCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCTGTTGA-TCTGATGCAGCTGAC 32211
Query 119303 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTA 119362
|| ||| || || || ||| |||||||||| | || |||| | | ||| || ||||
Sbjct 32210 AGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCACACTGCTTCAGAGTGTCGTA 32151
Query 119363 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCT 119422
||| || ||||| ||| |||| | |||| ||||||||||| |||| ||||||||
Sbjct 32150 GATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAGCAGCTGGACAGCTGAGGCCT 32091
Query 119423 GGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCT-TGGGACATCT 119481
| ||||| || ||||||||||| || | |||||| ||||| || | | |||| |
Sbjct 32090 GTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTGAAC-CACTTCTCCGACAGCA 32032
Query 119482 TGTCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCA 119541
|| ||||||||| | | | ||| ||||| | ||| || || | || |||| ||
Sbjct 32031 GGTTGTAGGTCTCAATGGCTGCGTCGATGTCCGTTCTGTGGATGCCAACAGAAACCCTCA 31972
Query 119542 TAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGCCTCTGGAGGTAACTCTTCT 119601
| | ||||| |||||| ||| || | || | || | || | ||||| | ||
Sbjct 31971 TGAGCATGTGCTGGGGTCGTTCGGCCACTTTGCCGTTGATCTTCAGCAGGTAGGACCGCT 31912
Query 119602 CCAAGGTCTTGAGACCAAA 119620
||| ||||||| |||||
Sbjct 31911 CCAGAGTCTTGAAGCCAAA 31893
>seq30
Length=3550406
Score = 95.1 bits (104), Expect = 1e-14
Identities = 76/92 (83%), Gaps = 0/92 (0%)
Strand=Plus/Minus
Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241
||||| ||| | ||||| | ||||| | |||| ||||| |||| ||| ||||| |||||
Sbjct 774268 TAGATGTTGCTGGTGTAGGCCTCAATGGACTCGTTGTTGCCCAGGATCTGGGCAGTGGAA 774209
Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 118273
|||||||||||||| |||| ||| ||||||||
Sbjct 774208 GCTGTGGGCATGGGGGCCAAGAGCAGGCTGTT 774177
Score = 84.2 bits (92), Expect = 3e-11
Identities = 105/142 (74%), Gaps = 4/142 (3%)
Strand=Plus/Minus
Query 118752 GTGTACTCTATAATTTCCGTGCACAAGTT--TGAACTCTTAATGGTGCCCAAGTTCTTTT 118809
|||||||||| || || ||||||| ||| || | | | |||||||||| ||||| |
Sbjct 773353 GTGTACTCTACGATCTCTGTGCACAGGTTGCTGGATT--TGATGGTGCCCAGGTTCTGCT 773296
Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869
| || ||| || || |||||||||||||||||||| || || ||||| ||||| |
Sbjct 773295 GGTTGCTCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCT 773236
Query 118870 GGGACTTGAGAATAGCCTTCCA 118891
| |||| || || || | |||
Sbjct 773235 GAGACTCGATGATGGCGTACCA 773214
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618386544610640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |