Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq67 223 4e-53 seq508 91.5 2e-13 >seq67 Length=1635559 Score = 223 bits (246), Expect = 4e-53 Identities = 902/1397 (65%), Gaps = 38/1397 (3%) Strand=Plus/Plus Query 104314 GTTCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAG 104373 ||||| ||||| | || || ||||||||||| ||||| || || || ||||||| Sbjct 32048 GTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTGTCCAG 32107 Query 104374 TTGCTTCCTTATCGCCAACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGA 104433 |||||||| |||||| ||||| ||| ||| | || ||||| | ||||| | | | Sbjct 32108 CTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTGAAGCA 32167 Query 104434 GTGTGCGCAAATCTCAAAGTGGGCTGGGGGTATTGGGATGCACATCCATGATG--TGAGA 104491 |||||| | |||||||||| |||||| || || || || || | || | ||| Sbjct 32168 GTGTGCCCTCATCTCAAAGTCGGCTGGAGGAATCGGTGTGGCTGTCA--GCTGCATCAGA 32225 Query 104492 GCCA-ATAAATCTCGTATTCGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCT 104550 | | | | || ||| || ||||| || | ||| | || | | || ||||| Sbjct 32226 TCAACAGGGAGCTAC-ATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCATGCT 32284 Query 104551 TCGCGTATTTAACGCCACAGCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGAT 104606 | || | ||| ||| ||||| ||||| | || | || | | |||| ||| Sbjct 32285 GAGAGTTTACAACAACACGGCGCGTTATGTCGACCAGGGCGG-CAACAAAAGACCCGGAG 32343 Query 104607 CTATCGCAGTCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTC 104666 | |||| | || || ||||| |||||| ||| | | || ||||| ||| || Sbjct 32344 CCTTCGCCATGTACCTGGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAAGA 32403 Query 104667 TCAACCAAGGTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAG 104726 ||| ||| | |||||| | || | | || || |||| ||| || ||||| || | Sbjct 32404 AGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTACGCCCTGTGGATCCCTG 32463 Query 104727 ATCTCTTCATGAAGAGAGTTGAGGAGAGTGGCAAT---TGGTCTCTCTTTTGTCCAGACA 104783 | | |||||||||||||| ||| || | | |||||||| | ||||| | Sbjct 32464 ACTTGTTCATGAAGAGAGT---GGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATG 32520 Query 104784 AGGCACCTGGTCTCTCCGA-TGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTAC 104842 || || || || ||| || | ||||||||||||||| || ||||| || Sbjct 32521 AGTGTCCCGGGCTGGACGAGTGTTG-GGGTGAGGAGTTTGAGAAGCTCTACACTTCATAT 32579 Query 104843 GAGGAAGAAGGTCGGGCGACTGCGAC-GGTGCCAGCTGCCGATGTGTGGAAAGCTATTCT 104901 ||| | || || ||| | ||| |||| ||| | |||||| | || || | Sbjct 32580 GAGAAGGAGGGGAGGGTCAA-GCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCAT 32638 Query 104902 CAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAA 104961 |||| || || || || ||||| || |||||||| |||||||||||||| |||| ||| Sbjct 32639 TGAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAA 32698 Query 104962 GAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGA 105021 ||| || || ||||| |||| ||||| || ||| ||||| ||||||||| | || Sbjct 32699 GAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAACCTCTGCACAGAAATCGTTGA 32758 Query 105022 ATTTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTA 105081 || || | | |||||| || || ||||| || || || || || ||| || ||| Sbjct 32759 ATACACCAGCGACGATGAGGTAGCGGTCTGTAATCTGGCCTCCATTGCGCTCAACATGTA 32818 Query 105082 TGTGGATCCAGAGACAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGT 105141 || || ||| ||| ||||| | | ||||||| || || ||| || Sbjct 32819 CGTCACCCCTGAG---CGGACTTTTGACTTTAAAAAACTAGCATCTGTGACCAAA---GT 32872 Query 105142 CA---CCAAAAACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCG 105198 || || |||| | |||| | || || | || || || || || || Sbjct 32873 CATTGTCAGAAACTTGAACAAGATCATCGAGATTAACTTCTATCCAGTGCCCGAAGCGGA 32932 Query 105199 TAAATCTAATATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATT 105258 || || || | | | ||| | ||||| || |||| ||||| ||| | ||||||| || Sbjct 32933 GAAGTCCAACAAGCGTCACAGGCCAATAGGAATCGGCGTTCAAGGTTTGGCGGATGCCTT 32992 Query 105259 CATTCTTTGTCGCCACGCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATT 105318 ||| || || || | ||||| | ||| ||| || | || | || || Sbjct 32993 CATCCTGATGCGTTACCCGTTTGAAAGCCCCGAGGCGCAGCTGCTGAACATCCAAATCTT 33052 Query 105319 TGAGACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCC 105378 ||||||||| || ||||||| || |||||||| | ||| |||| | | || || Sbjct 33053 TGAGACCATCTACTACGCCGCCCTGGAGGCGAGCTGCGAGCTGGCCGCTGAGCTCGGCCC 33112 Query 105379 ATATGAAACCTTTGAGGGTTCTCCAGCTTCA-CAAGGGG-TGCTTCAATTTGATATGTGG 105436 || || || | || || ||||| | ||| ||||||| | || || | || |||||| Sbjct 33113 CTACGAGACGTACGAAGGCTCTCCGG--TCAGCAAGGGGATCCTCCAGTACGACATGTGG 33170 Query 105437 GAAGGTGA-GACCAAGCTTCACTACGACTGGGAAGCT-CTCAAGGAACGCATCAAGGAGA 105494 | || || | ||| || | |||| ||||||| || |||||| ||| | Sbjct 33171 G-AGAAGACGCCCACCGATCTGTTGGACT-GGAAGCTGCTGAAGGAAAAGATCGCCAAAC 33228 Query 105495 AGGGTCTTCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCT 105554 | || | | ||||| || || |||| || ||||| || |||||||| ||||| ||| Sbjct 33229 ACGGCGTGAGGAACAGCCTACTGCTGGCCCCGATGCCCACGGCCTCCACAGCACAGATCC 33288 Query 105555 TGGGTAATAATGAATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCG 105614 |||| || || || | | ||| ||||||| | |||||||| | || |||| Sbjct 33289 TGGGCAACAACGAGTCTATCGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTCT 33348 Query 105615 CGGGAGAGTTTGTGATTGTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCT 105674 | ||||||||| ||| || || ||||| | | ||||| | |||| || || | Sbjct 33349 CTGGAGAGTTTCAGATCGTGAATCCTCATCTGCTCAAAGACCTGACGGAGAGGGGGCTGT 33408 Query 105675 GGTCCAAGGATATGAAG 105691 || | |||| |||||| Sbjct 33409 GGAACGAGGAGATGAAG 33425 >seq508 Length=211378 Score = 91.5 bits (100), Expect = 2e-13 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||||||||||||||| || || ||| || || ||||||||||||||| |||| Sbjct 169527 GTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCCATCTATTGGCTCAAGAAGAGAGGG 169586 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || ||||| ||||| ||||||||| ||||| || Sbjct 169587 CTAATGCCTGGTCTTACCTTCTCCAATGAGCTGAT 169621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583214911956560