Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq67 280 2e-70 seq134 89.7 6e-13 seq508 87.8 2e-12 seq30 87.8 2e-12 >seq67 Length=1635559 Score = 280 bits (310), Expect = 2e-70 Identities = 950/1460 (65%), Gaps = 55/1460 (4%) Strand=Plus/Minus Query 78508 AACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTCG 78567 ||||| || | ||| || ||| |||||||||| | ||||| | |||| || |||| Sbjct 33358 AACTCTCCAGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCGATAGACTCG 33299 Query 78568 TTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATTC 78627 ||||| |||| |||||| || || ||||| || ||||| || || | |||||| ||| Sbjct 33298 TTGTTGCCCAGGATCTGTGCTGTGGAGGCCGTGGGCATCGGGGCCAGCAGTAGGCTGTTC 33239 Query 78628 CGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGCC 78681 | | || || | ||||| |||| || | |||| | | || | | | Sbjct 33238 CTCACGCCGTGTTTGGCGATCTTTTCCTTCAGCAGCTTCCAGTCCAACAGATCGGTGGGC 33179 Query 78682 GCGATCCCCCACATGTCCGGTTGAAGGATACCCTCGGACGCCGGCGACCCCTTGAACGTC 78741 | || |||||||||| || ||||| |||| | |||| || || | | ||||| Sbjct 33178 GTCTTCTCCCACATGTCGTACTGGAGGATCCCCTTGCTGACCGGAGAGCCTTCGTACGTC 33119 Query 78742 TCGTAAGATCCCTCCTCCTTGGCGAGTTCGCATGACTCGAGCAGGGCCGCGTGGTACACA 78801 ||||| | || ||| ||| || ||||| | | |||||| |||| ||| | Sbjct 33118 TCGTAGGGGCCGAGCTCAGCGGCCAGCTCGCAGCTCGCCTCCAGGGCGGCGTAGTAGATG 33059 Query 78802 GCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTTGGTCTCGTCGAACGA--AAGGCCGA 78859 | ||| ||||| |||| ||| |||||| || || |||| || || | Sbjct 33058 GTCTCAAAGATTTGGATGTTCAGCAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGC--A 33001 Query 78860 GCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCGCATGT 78919 || |||||| |||| |||| || || |||||||| | || || | ||| ||| ||| Sbjct 33000 TCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGT 32941 Query 78920 TGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTTCAGGT 78976 || ||| |||| |||| | || || ||||| ||||||| ||||| || Sbjct 32940 TGGACTTCT---CCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGT 32884 Query 78977 TACGCGTGAC---GACCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATTTCCTT 79033 | | |||| ||| ||||| | ||| || |||||| ||| Sbjct 32883 TTC---TGACAATGACTTTGGTCACAGATGCTAGTTTTTTAAAGTCAAAAG----TCCGC 32831 Query 79034 TGATGAAAGTCG-----GTAG-GCACAGCG-ATGCCAGGTTGCACACGGCCGTCTCGTCC 79086 | | | | || || | || || | | ||||| || || || || ||| || Sbjct 32830 TCAGGGGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCG 32771 Query 79087 GGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTC 79146 ||| | || | |||||||||||| | || ||||| ||||| | ||| Sbjct 32770 TCGCTGGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTC 32711 Query 79147 TTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCA 79206 | |||||||||||| ||| |||||||| ||||| |||||||||||| ||||| || Sbjct 32710 TGCTGGTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCT 32651 Query 79207 ACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTACCGA 79266 ||| || | | | ||| ||| | | | | ||| || || |||| || Sbjct 32650 GTCTGGGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTTGACCCTC 32591 Query 79267 CCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACA-TCGGGCAG 79325 |||| | || | ||| | || | || |||| || | ||| ||| ||| Sbjct 32590 CCCTCCTTCTCATATGAAGTGTAGAGCTTCTCAAACTCCTCACCCCA-ACACTCGTCCAG 32532 Query 79326 GCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCCAT 79385 || || ||||| | || |||||||| |||||| | || | || || ||| ||| Sbjct 32531 CCCGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCAT 32472 Query 79386 GAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCGCC 79445 ||| | ||| |||||||||||||| ||| ||||| | | | | |||||| | || Sbjct 32471 GAACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCC 32412 Query 79446 CTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAGAT 79505 |||| |||||| || ||||| | | ||| ||||||||||||||| || || Sbjct 32411 TGTGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACAT 32352 Query 79506 GGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTGAA 79565 |||||| | || | ||| ||||||||||| ||| || || |||||||||||| | Sbjct 32351 GGCGAAGGCTCCGGGTCTTTTGTTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTA 32292 Query 79566 AACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTACC 79625 ||||| |||||||| || | |||| | | |||||| || ||| || ||| Sbjct 32291 AACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAAT----GTA-- 32238 Query 79626 GCTCGCCCGAATGTTC-GA-GCAGTGGATT------CCGATGCCCCCGGACCACTTGGAG 79677 |||| || || || || |||| || ||||| || || | | |||| ||| Sbjct 32237 GCTC--CCTGTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACTTTGAG 32180 Query 79678 ATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAGCG 79737 ||| | || |||| ||| || || ||||||||||| ||||| |||||||||||| ||| Sbjct 32179 ATGAGGGCACACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCG 32120 Query 79738 ACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTACCGGCGTTGAAGAGGGTCGGCGTC 79797 | |||||||||||| |||| ||| || |||| |||||||| |||||||| || |||| Sbjct 32119 AGCAGGAAGCAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAG 32060 Query 79798 GCGTGCGTGAAGAACTTTTGGCTCATCAGATCGTACGTCTCCTTGAC-GCGCGGGAGGTC 79856 ||||| ||||| |||| | || ||| | ||| ||||| || | ||| || ||| Sbjct 32059 GCGTGGGTGAACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCG-TCGATGTC 32001 Query 79857 GTCGCCGTGGATGCCGACCGCGACGCGCATGAAGAGGTACTGGGG-CGTCTCGCCGACAT 79915 | ||||||||| || | || | ||||| | || |||||| ||| ||| | || | Sbjct 32000 CGTTCTGTGGATGCCAACAGAAACCCTCATGAGCATGTGCTGGGGTCGT-TCGGCCACTT 31942 Query 79916 TCAGGTAGCCCTTCTGCAGG 79935 | || | |||| ||||| Sbjct 31941 TGCCGTTGATCTTCAGCAGG 31922 Score = 201 bits (222), Expect = 1e-46 Identities = 852/1333 (64%), Gaps = 47/1333 (4%) Strand=Plus/Plus Query 19166 GAGACATACGACCTGATGAGCCAGAAGTTCTTCACGCACGCGACGCCGACCCTTTTCAAC 19225 ||||| ||| ||||| || |||||| ||||| ||||| |||| || || ||||| Sbjct 32019 GAGACCTACAACCTGCTGTCGGAGAAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAAT 32078 Query 19226 GCCGGTACGAACAACCCGCAGATGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGC 19285 |||||||| |||| || ||| |||| ||||| ||||| | || |||||||| |||||| Sbjct 32079 GCCGGTACCAACAGGCCTCAGCTGTCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGC 32138 Query 19286 ATTGAGGGCATCTACGAGACGCTCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGT 19345 || || ||||||||||| || || ||| |||| || | |||||| |||| | | || || Sbjct 32139 ATCGAAGGCATCTACGACACTCTGAAGCAGTGTGCCCTCATCTCAAAGTCGGCTGGAGGA 32198 Query 19346 ATCGGGATCCACTGCTCGAAT--ATCCGGTCGAGTGGTACACGAATCAATGGGACGAACG 19403 ||||| | ||| || | ||| | || | || | || || || |||| Sbjct 32199 ATCGGTGT-GGCTG-TCAGCTGCATCAGATCAACAGGGAGCTACATTGCCGGCACAAACG 32256 Query 19404 GAGTAGCCGACGGTATCGTCCCAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCA 19463 | | |||| | ||||| ||||| | || | |||||||||||| | || ||| Sbjct 32257 GCAACTCAAACGGGTTAGTCCCCATGCTGAGAGTTTACAACAACACGGCGCGTTATGTCG 32316 Query 19464 ACCAGGGGGGCGGCAAACGCAAGGGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGG 19523 ||||||| ||| |||| | || | |||||||| ||||| ||||| |||||| | Sbjct 32317 ACCAGGGCGGCAACAAAAGACCCGGAGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCG 32376 Query 19524 ACGTCATGGATTTCCTCGAACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCG 19583 | || | || ||||| || ||| |||| || | |||||| | | | | Sbjct 32377 ATGTGTTTGACTTCCTGGAGCTGAAGAAGAACACAGGAAAGGAGGAGCAGAGGGCCAGAG 32436 Query 19584 ACCTCTTCACGGCCTTGTGGATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAG 19643 |||| ||| ||| ||||||| || ||| | |||||| ||| || || | || ||| Sbjct 32437 ACCTTTTCTACGCCCTGTGGATCCCTGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAG 32496 Query 19644 AATGGCACCTGATGTGCCCGCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGT 19703 | ||| |||||||| || | || || || || || ||| | || |||| || Sbjct 32497 ACTGGTCTCTGATGTGTCCCAATGAGTGTCCCGGGCTGGACGAGTGTTGGGGTGAGGAGT 32556 Query 19704 TCAATGAGTTGTACCGGACTTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCC 19763 | | || | ||| | || | |||| || ||||| ||||| ||| | Sbjct 32557 TTGAGAAGCTCTACACTTCATATGAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTC 32616 Query 19764 GGGACGTCTGGGACCGCGTCCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCT 19823 | | || ||| || | || | | |||| || ||||| || ||||||||| | Sbjct 32617 AGCAGGTGTGGCACGCCATCATTGAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGT 32676 Query 19824 ACAAGGACGCCGCGAACGCCAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCA 19883 |||| |||||| ||| ||| || ||| |||| | ||| | ||||| || Sbjct 32677 ACAAAGACGCCTGCAACCGAAAGAGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCA 32736 Query 19884 ACCTGTGTACTGAAATCATGGAGGTTTCCAAGCCGGACGAGACTGCCGTGTGTAATCTGG 19943 |||| || || |||||| | || ||| || ||| || || |||||||||| Sbjct 32737 ACCTCTGCACAGAAATCGTTGAATACACCAGCGACGATGAGGTAGCGGTCTGTAATCTGG 32796 Query 19944 CGTCCCTGTGC-CTGCCGACTTTCGTCAAGGCCTCCT-------CCTTCGACTTTGCCAA 19995 | ||| | ||| || | | ||||| | ||| | || |||||| || Sbjct 32797 CCTCCAT-TGCGCTCAACATGTACGTCA----CCCCTGAGCGGACTTTTGACTTTAAAAA 32851 Query 19996 ATTGTACGAGGTGACCCGGGTC---GTCACGCGTAATCTGAATCGCGTCATCGATCGGAA 20052 | | |||||| ||| |||| | || |||| ||||||| || Sbjct 32852 ACTAGCATCTGTGACCAAAGTCATTGTCA---GAAACTTGAACAAGATCATCGAGATTAA 32908 Query 20053 CTTTTACCC---GACCGAGGCGGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGAT 20109 ||| || || | |||| |||| | ||||| || | ||| ||| |||| || | || Sbjct 32909 CTTCTATCCAGTGCCCGAAGCGGAG---AAGTCCAACAAGCGTCACAGGCCAATAGGAAT 32965 Query 20110 CGGCGTCCAGGGCCTGGCCGACGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAA 20169 |||||| || || |||| || | ||||| || | | | | || || ||| | Sbjct 32966 CGGCGTTCAAGGTTTGGCGGATGCCTTCATCCTGATGCGTTACCCGTTTGAAAGCCCCGA 33025 Query 20170 GGCGCGCGAGCTCAACAAGGGCATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATC 20229 ||||| ||| |||| ||||| ||| || | ||| |||| || |||||| | Sbjct 33026 GGCGCAGCTGCTGAACATCCAAATCTTTGAGACCATCTACTACGCCGC---CCTGGAGGC 33082 Query 20230 G---TGCGAACTCGCCAAAGAGGACGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTC 20286 | ||||| || ||| ||| |||||| |||||||||| | | || || || | Sbjct 33083 GAGCTGCGAGCTGGCCGCTGAGCTCGGCCCCTACGAGACGTACGAAGGCTCTCCGGTCAG 33142 Query 20287 CGAGGGTATCCTCCAGCCGGACATGTGG-----GGCG-TCACTGAGAATGAGTT---TTG 20337 | |||| ||||||||| ||||||||| | || ||| | || ||| || Sbjct 33143 CAAGGGGATCCTCCAGTACGACATGTGGGAGAAGACGCCCACCG---ATCTGTTGGACTG 33199 Query 20338 GAGCGCCCTCAAGGTTGAGATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCC 20397 || || |||| ||||| | ||||| | | ||| | || | || || Sbjct 33200 GAAGCTGCTGAAGGAAAAGATCGCCAAACACGGCGTGAGGAACAGCCTACTGCTGGCCCC 33259 Query 20398 CATGCCGACCGCCTCGACCGCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACAC 20457 ||||| || ||||| || || |||||| |||| ||||||||| || |||| | ||||| Sbjct 33260 GATGCCCACGGCCTCCACAGCACAGATCCTGGGCAACAACGAGTCTATCGAAGCCTACAC 33319 Query 20458 GACCAACATCTAC 20470 | |||||||||| Sbjct 33320 CAGCAACATCTAC 33332 >seq134 Length=707179 Score = 89.7 bits (98), Expect = 6e-13 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 60330 ATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACC 60389 || ||| | ||| | ||||| ||||||| ||||||| ||| || |||| || |||||| Sbjct 318787 ATCTACCGGGTGGAGAACCCGTTCGACTTCATGGAGAACATTTCTCTGGAGGGAAAGACC 318846 Query 60390 AACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 ||||||||||||||||||||||| || || Sbjct 318847 AACTTCTTTGAGAAGCGGGTCGGCGAGTA 318875 >seq508 Length=211378 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 59991 GCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTC 60050 ||||| ||| ||||| || ||||||||||| ||||| ||| ||| || | |||||| Sbjct 169515 GCTTTCGCAGCAGTGGAGGGTATCTTCTTCTCAGGCTCATTCGCTGCCATCTATTGGCTC 169574 Query 60051 AAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAG 60110 || ||| | || || ||||| || || | |||||||| ||||||||| | |||| ||| Sbjct 169575 AAGAAGAGAGGGCTAATGCCTGGTCTTACCTTCTCCAATGAGCTGATTAGCAGGGATGAG 169634 Query 60111 G 60111 | Sbjct 169635 G 169635 >seq30 Length=3550406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 79098 CTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCT 79157 ||| | ||| |||||||||| || || ||||||||||| | ||||| ||||||||| Sbjct 773348 CTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGCT 773289 Query 79158 CTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 |||| | || ||||| |||||||| ||||||||| || || || || Sbjct 773288 CTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTC 773241 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548481644811360