Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17]
6,294 sequences; 619,300,777 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq67 179 4e-40
seq30 87.8 2e-12
seq134 84.2 2e-11
seq31 82.4 8e-11
seq15 82.4 8e-11
>seq67
Length=1635559
Score = 179 bits (198), Expect = 4e-40
Identities = 464/699 (66%), Gaps = 6/699 (1%)
Strand=Plus/Plus
Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326
|||| || || |||||| |||| || || ||||| || ||||| || |||||| ||
Sbjct 32043 AAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTG 32102
Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386
|| |||||||||||| | || |||||||| ||| ||||| ||||||||||| || ||
Sbjct 32103 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTG 32162
Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTG-CTCGAACGT 53445
||| ||||||||| |||||| |||| | | || || |||||| | ||| | | |
Sbjct 32163 AAGCAGTGTGCCCTCATCTCAAAGTCGGCTGGAGGAATCGGTGT-GGCTGTCAGCTGCAT 32221
Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505
| | | | || | || || || |||||| | | | || | || || ||
Sbjct 32222 CAGATCAACAGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCAT 32281
Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565
||| | || | |||||||||||| || || ||| ||||||| || || | ||
Sbjct 32282 GCTGAGAGTTTACAACAACACGGCGCGTTATGTCGACCAGGGCGGCAACAAAAGACCCGG 32341
Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625
| |||||||| ||||| |||||||||||| ||| | | || || || ||||||
Sbjct 32342 AGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAA 32401
Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684
||| || | || ||| | | | | ||||| || ||| || |||||||| |
Sbjct 32402 GAAGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTAC-GCCCTGTGGATCC 32460
Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744
| ||| | |||||| | | ||||| | || | || |||| |||||||| || || |
Sbjct 32461 CTGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATG 32520
Query 53745 AGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC 53803
|||| ||||| || | | |||| | |||||||||||| | || | || | ||
Sbjct 32521 AGTGTCCCGGGCTGGACGAGTGT-TGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATAT 32579
Query 53804 GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863
| |||| | |||| ||| ||||| | |||| ||| | || ||| |
Sbjct 32580 GAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATT 32639
Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923
|| |||| || || || |||||||||||| ||||| || | |||| |||
Sbjct 32640 GAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAG 32699
Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962
||||||||| |||| | ||| |||||| ||||||
Sbjct 32700 AGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAAC 32738
>seq30
Length=3550406
Score = 87.8 bits (96), Expect = 2e-12
Identities = 99/133 (74%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889
||| ||||| | || | ||| | || ||| || || ||| ||| |||||||| ||
Sbjct 773195 GGTGAAGGCTCAGCAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAAACGGGAACCCC 773254
Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949
||||||| ||||||||| | ||| | ||||||||||||| ||||| | ||| |||
Sbjct 773255 GTACATGCTTTACAAGGATGCCTGCAATGGGAAGAGCAACCAGCAGAACCTGGGCACCAT 773314
Query 53950 CAAATCGAGCAAC 53962
|||||| ||||||
Sbjct 773315 CAAATCCAGCAAC 773327
Score = 82.4 bits (90), Expect = 8e-11
Identities = 87/115 (76%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551
||||||| |||| || ||||| || || || || || |||||| |||||||||||||| |
Sbjct 774182 CCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATCCTGGGCAACAACGAGTC 774241
Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606
| ||| | ||||| | |||||||||| ||| || || |||| ||||||
Sbjct 774242 CATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTT 774296
>seq134
Length=707179
Score = 84.2 bits (92), Expect = 2e-11
Identities = 64/76 (84%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522
|| || ||||||||||| ||||| ||||||||||| || |||| || |||||||||||
Sbjct 318875 TACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 318816
Query 74523 CAGTCGAAAGGGTTCT 74538
||||||| |||||||
Sbjct 318815 AAGTCGAACGGGTTCT 318800
>seq31
Length=3450881
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364
||||| |||||||||| ||| ||||| || ||||| ||| | || |||||||| ||
Sbjct 235508 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCGAACTGA 235449
Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424
|| |||| || | ||||| ||||| |||||||||||| || |||||||| ||
Sbjct 235448 CCCAGTGGCTGCAGTATGTTCACATTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACG 235389
Query 117425 ATCGT 117429
|| ||
Sbjct 235388 ATGGT 235384
>seq15
Length=4954414
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088
|||||||||||||| | |||||| | |||||||| || || || |||||||||||
Sbjct 3245187 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCATGCAACCTGGTTCCAAACTGA 3245246
Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148
|| ||||| | ||||| | |||||| ||||| || ||||| |||||| ||||
Sbjct 3245247 CCCAGGGGCTGCAACAGGTTCAAGTTGTTACTTCCCACAAAGTTCTGGGCCAAACCCACA 3245306
Query 152149 ATCGT 152153
|| ||
Sbjct 3245307 ATAGT 3245311
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547172947781200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |