Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq67 179 4e-40 seq30 87.8 2e-12 seq134 84.2 2e-11 seq31 82.4 8e-11 seq15 82.4 8e-11 >seq67 Length=1635559 Score = 179 bits (198), Expect = 4e-40 Identities = 464/699 (66%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 53267 AAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATG 53326 |||| || || |||||| |||| || || ||||| || ||||| || |||||| || Sbjct 32043 AAGTGGTTCACCCACGCCTCGCCTACTCTCTTCAATGCCGGTACCAACAGGCCTCAGCTG 32102 Query 53327 TCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTC 53386 || |||||||||||| | || |||||||| ||| ||||| ||||||||||| || || Sbjct 32103 TCCAGCTGCTTCCTGCTCGCCATGAAGGACGACAGCATCGAAGGCATCTACGACACTCTG 32162 Query 53387 AAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTG-CTCGAACGT 53445 ||| ||||||||| |||||| |||| | | || || |||||| | ||| | | | Sbjct 32163 AAGCAGTGTGCCCTCATCTCAAAGTCGGCTGGAGGAATCGGTGT-GGCTGTCAGCTGCAT 32221 Query 53446 CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTAT 53505 | | | | || | || || || |||||| | | | || | || || || Sbjct 32222 CAGATCAACAGGGAGCTACATTGCCGGCACAAACGGCAACTCAAACGGGTTAGTCCCCAT 32281 Query 53506 GCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGG 53565 ||| | || | |||||||||||| || || ||| ||||||| || || | || Sbjct 32282 GCTGAGAGTTTACAACAACACGGCGCGTTATGTCGACCAGGGCGGCAACAAAAGACCCGG 32341 Query 53566 GTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCG 53625 | |||||||| ||||| |||||||||||| ||| | | || || || |||||| Sbjct 32342 AGCCTTCGCCATGTACCTGGAGCCGTGGCACTTCGATGTGTTTGACTTCCTGGAGCTGAA 32401 Query 53626 TCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTC 53684 ||| || | || ||| | | | | ||||| || ||| || |||||||| | Sbjct 32402 GAAGAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTTTTCTAC-GCCCTGTGGATCC 32460 Query 53685 CGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACG 53744 | ||| | |||||| | | ||||| | || | || |||| |||||||| || || | Sbjct 32461 CTGACTTGTTCATGAAGAGAGTGGAAAGCAACCAAGACTGGTCTCTGATGTGTCCCAATG 32520 Query 53745 AGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTAC 53803 |||| ||||| || | | |||| | |||||||||||| | || | || | || Sbjct 32521 AGTGTCCCGGGCTGGACGAGTGT-TGGGGTGAGGAGTTTGAGAAGCTCTACACTTCATAT 32579 Query 53804 GCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTC 53863 | |||| | |||| ||| ||||| | |||| ||| | || ||| | Sbjct 32580 GAGAAGGAGGGGAGGGTCAAGCGTGTGGTGAAGGCTCAGCAGGTGTGGCACGCCATCATT 32639 Query 53864 AAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAG 53923 || |||| || || || |||||||||||| ||||| || | |||| ||| Sbjct 32640 GAGTCCCAGACAGAAACCGGTACGCCGTACATGCTGTACAAAGACGCCTGCAACCGAAAG 32699 Query 53924 AGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAAC 53962 ||||||||| |||| | ||| |||||| |||||| Sbjct 32700 AGCAACCAGCAGAATCTGGGCACAATCAAAAGCAGCAAC 32738 >seq30 Length=3550406 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 53830 GGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCC 53889 ||| ||||| | || | ||| | || ||| || || ||| ||| |||||||| || Sbjct 773195 GGTGAAGGCTCAGCAGCTGTGGTACGCCATCATCGAGTCTCAGACGGAAACGGGAACCCC 773254 Query 53890 GTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCAT 53949 ||||||| ||||||||| | ||| | ||||||||||||| ||||| | ||| ||| Sbjct 773255 GTACATGCTTTACAAGGATGCCTGCAATGGGAAGAGCAACCAGCAGAACCTGGGCACCAT 773314 Query 53950 CAAATCGAGCAAC 53962 |||||| |||||| Sbjct 773315 CAAATCCAGCAAC 773327 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 55492 CCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAACAACGAGGC 55551 ||||||| |||| || ||||| || || || || || |||||| |||||||||||||| | Sbjct 774182 CCTGCTCTTGGCCCCCATGCCCACAGCTTCCACTGCCCAGATCCTGGGCAACAACGAGTC 774241 Query 55552 GTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTGAGTTT 55606 | ||| | ||||| | |||||||||| ||| || || |||| |||||| Sbjct 774242 CATTGAGGCCTACACCAGCAACATCTACACCCGCAGGGTGCTCTCAGGAGAGTTT 774296 >seq134 Length=707179 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||||||| ||||| ||||||||||| || |||| || ||||||||||| Sbjct 318875 TACTCGCCGACCCGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAAATGTTCTCCATG 318816 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||| ||||||| Sbjct 318815 AAGTCGAACGGGTTCT 318800 >seq31 Length=3450881 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| ||||| || ||||| ||| | || |||||||| || Sbjct 235508 GTGAAGATGTAACGAGGGCTGGCAGCGTCTTTGCCTCCATTGATGCGAGTACCGAACTGA 235449 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || | ||||| ||||| |||||||||||| || |||||||| || Sbjct 235448 CCCAGTGGCTGCAGTATGTTCACATTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACG 235389 Query 117425 ATCGT 117429 || || Sbjct 235388 ATGGT 235384 >seq15 Length=4954414 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| | |||||||| || || || ||||||||||| Sbjct 3245187 GTGAAGATGTATCGAGGGCTGGCAGAGTCCTTGCCGCCATGCAACCTGGTTCCAAACTGA 3245246 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| | ||||| | |||||| ||||| || ||||| |||||| |||| Sbjct 3245247 CCCAGGGGCTGCAACAGGTTCAAGTTGTTACTTCCCACAAAGTTCTGGGCCAAACCCACA 3245306 Query 152149 ATCGT 152153 || || Sbjct 3245307 ATAGT 3245311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547172947781200