Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq67 228 9e-55 seq331 174 2e-38 seq30 89.7 6e-13 >seq67 Length=1635559 Score = 228 bits (252), Expect = 9e-55 Identities = 805/1236 (65%), Gaps = 46/1236 (4%) Strand=Plus/Minus Query 80540 CCCACATGTCGTGCTGCAAGATGCCCT--CCGACGCCGGAGACCCCGCGAACGTCTCGTA 80597 |||||||||||| ||| | ||| |||| | ||| |||||| || || |||||||||| Sbjct 33171 CCCACATGTCGTACTGGAGGATCCCCTTGCTGAC--CGGAGAGCCTTCGTACGTCTCGTA 33114 Query 80598 CGGGCC---CTCCGTCTTGGCCAGCTCACA---CGACTCCATAAGGGCCGCGTGATAAAT 80651 ||||| ||| | ||||||||| || || ||||| |||| |||| || || Sbjct 33113 GGGGCCGAGCTCAGC---GGCCAGCTCGCAGCTCGCCTCCA---GGGCGGCGTAGTAGAT 33060 Query 80652 GCACTCAAAGACGCCCTTGTTCACACCGC-GCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 | |||||||| |||||| | || |||||| ||| || |||| | | || Sbjct 33059 GGTCTCAAAGATTTGGATGTTCAG-CAGCTGCGCCTCGGGGCTTTCAAACGGGTAACGCA 33001 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 ||| ||||| | || |||| || ||||||||||| | || || | ||| ||||||| Sbjct 33000 TCAGGATGAAGGCATCCGCCAAACCTTGAACGCCGATTCCTATTGGCCTGTGACGCTTGT 32941 Query 80771 TCGATCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGC 80830 | || ||| || || || | ||| || |||||| | ||||||| ||||| ||| | Sbjct 32940 TGGACTTCTCCGCTTCGGGCACTGGATAGAAGTTAATCTCGATGATCTTGTTCAAGTTTC 32881 Query 80831 GTGTAACAACCCGTGTAACATCATG-AAGTTTCTGAAAGTCGAATTGGTTCCCCTTCACA 80889 || || || ||| ||| ||||| | |||||| || || || ||| Sbjct 32880 TGACAATGACTTTGGTCACA-GATGCTAGTTTTTTAAAGTCAAA--AGT--CCGCTCAGG 32826 Query 80890 AATGCCGGA-AGGCTCAG------GGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 || || | | | | || ||| |||||||| || || || ||||| || | Sbjct 32825 GGTGACGTACATGTTGAGCGCAATGGAGGCCAGATTACAGACCGCTACCTCATCGTCGCT 32766 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 || | || |||||||| ||||| | || || ||||| ||||| || | ||| Sbjct 32765 GGTGTATTCAACGATTTCTGTGCAGAGGTTGCTGCTTTTGATTGTGCCCAGATTCTGCTG 32706 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||| |||||| ||||| ||||| ||||||||| |||||||| || ||| Sbjct 32705 GTTGCTCTTTCGGTTGCAGGCGTCTTTGTACAGCATGTACGGCGTACCGGTTTCTGTCTG 32646 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC---CTTGCGGAATTTGCC 81119 |||| | |||||||| ||| | || | ||||| ||||| ||| || | || Sbjct 32645 GGACTCAATGATGGCGTGCCACACCTGCTGAGCCTTCACCACACGCTT---GACCCTCCC 32589 Query 81120 TTCGGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGT 81178 || | |||| | ||| |||||| || |||| |||| | || || Sbjct 32588 CTCCTTCTCATATGAAGTGTAGAGCTTC-TCAAACTCCTCACCCCAACACTCGTCCAGCC 32530 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | || ||||| || || |||||||| |||||| || | | || || |||||||| Sbjct 32529 CGGGACACTCATTGGGACACATCAGAGACCAGTCTTGGTTGCTTTCCACTCTCTTCATGA 32470 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | |||||||||||| |||||| ||| ||||| | | | | |||||| | || Sbjct 32469 ACAAGTCAGGGATCCACAGGGCGTAGAAAAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTG 32410 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 ||| || ||| || ||||| | | || ||||| |||||||| |||| || Sbjct 32409 TGTTCTTCTTCAGCTCCAGGAAGTCAAACACATCGAAGTGCCACGGCTCCAGGTACATGG 32350 Query 81359 CGATCGACCC----CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 ||| | || ||| | ||| ||||||| ||| ||||| || || ||| | Sbjct 32349 CGAAGGCTCCGGGTCTTTTG-TTGCCGCCCTGGTCGACATAACGCGCCGTGTTGTTGTAA 32291 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 || | || ||| |||| | || | ||| | ||||| || || | || ||| Sbjct 32290 ACTCTCAGCATGGGGACTAACCCGTTTGAGTTGCCGTTTGTGCCGGCAATGTAGCTCCCT 32231 Query 81475 TTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCA 81534 | | | | ||||| | | |||||| || || | | ||||||| || | ||| Sbjct 32230 GTTGATCTGATGCAGCTGACAGCCACACCGATTCCTCCAGCCGACTTTGAGATGAGGGCA 32171 Query 81535 CACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGAAA 81594 ||| | |||| || || || || || |||||||| || | |||||| | |||| ||| Sbjct 32170 CACTGCTTCAGAGTGTCGTAGATGCCTTCGATGCTGTCGTCCTTCATGGCGAGCAGGAAG 32111 Query 81595 CAGCTTGACATCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATG 81654 ||||| |||| |||||| || || | ||||||||||| || || || | ||||| || Sbjct 32110 CAGCTGGACAGCTGAGGCCTGTTGGTACCGGCATTGAAGAGAGTAGGCGAGGCGTGGGTG 32051 Query 81655 AAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGAC-GCGTGGAATATCGTCACCGTG 81713 || | | |||| ||||| ||||| || || | |||| | || || | ||| Sbjct 32050 AACCACTTCTCCGACAGCAGGTTGTAGGTCTCAATGGCTGCGTCG-ATGTCCGTTCTGTG 31992 Query 81714 AATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 || || | || || | ||| | ||||| |||||| Sbjct 31991 GATGCCAACAGAAACCCTCATGAGCATGTGCTGGGG 31956 >seq331 Length=323222 Score = 174 bits (192), Expect = 2e-38 Identities = 177/231 (77%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| || ||||||||||| || || || ||||||||| | | Sbjct 7700 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGAGCCCAGC 7641 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || ||||| || |||||| Sbjct 7640 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7581 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || || |||| || ||||| | |||||||| Sbjct 7580 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAAC 7521 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 |||| ||||| ||||| || || || ||| ||||||| | || || ||| Sbjct 7520 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCTGAGGGGCGGTCAA 7470 Score = 163 bits (180), Expect = 3e-35 Identities = 167/218 (77%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||||||||| || || |||||||| ||| | || Sbjct 7928 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGAGCCCAGT 7869 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||||| || || ||||| ||||| || ||||| || |||||| Sbjct 7868 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAG 7809 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 7808 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAAC 7749 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 7748 ATCCAGAAGGAGTCCACCCTCCACCTTGTCCTGCGTCT 7711 Score = 163 bits (180), Expect = 3e-35 Identities = 165/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27422 AGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATT 27481 |||| || ||||||||||| || || |||||||||||| || |||| | |||| ||| Sbjct 11487 AGACCCTGACCGGCAAGACCATCACCCTTGAGGTTGAGCCAAGTGACACTATTGAGAATG 11428 Query 27482 TGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTG 27541 | ||||| || || ||||| ||||| || ||||| || ||||||||| | || || |||| Sbjct 11427 TCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCTGACCAGCAGAGGCTGATCTTTG 11368 Query 27542 CTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCA 27601 | || |||||||| || |||| || ||||| | ||||| ||| |||| ||||| |||| Sbjct 11367 CCGGCAAGCAACTGGAAGATGGCCGCACCCTCTCCGACTACAATATCCAGAAGGAGTCCA 11308 Query 27602 CTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACAA 27636 | || || || ||| ||||||| | || || ||| Sbjct 11307 CCCTCCACCTTGTCCTGCGTCTGAGGGGCGGTCAA 11273 Score = 152 bits (168), Expect = 6e-32 Identities = 141/179 (79%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||||||||| || || |||||||| || || |||||||| ||| | | Sbjct 13107 ATGCAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCCAGC 13048 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| ||||||||||||||||||||||||| || ||||| || |||||| Sbjct 13047 GACACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAG 12988 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | || || ||||| || ||||| || || |||| || ||||| | ||||| || Sbjct 12987 CAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 12929 >seq30 Length=3550406 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 80948 ACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTG 81007 |||| ||||| || ||||||| || || || || || |||||||| | |||||| Sbjct 773349 ACTCTACGATCTCTGTGCACAGGTTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTGC 773290 Query 81008 ACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACT 81067 ||| | ||||| || |||||||| |||||||||||| || || || ||| |||| Sbjct 773289 TCTTCCCATTGCAGGCATCCTTGTAAAGCATGTACGGGGTTCCCGTTTCCGTCTGAGACT 773230 Query 81068 TGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCAC 81104 || |||||||| ||| | || | ||||| ||||| Sbjct 773229 CGATGATGGCGTACCACAGCTGCTGAGCCTTCACCAC 773193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570265530829280