Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq95 156 3e-33 seq90 102 7e-17 >seq95 Length=1145539 Score = 156 bits (172), Expect = 3e-33 Identities = 139/174 (80%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 863712 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 863653 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 |||||||| ||||| || || || | |||||| ||||||||||| ||||| || |||| | Sbjct 863652 ACCCCGAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 863593 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 30115 ||||| |||||||||| ||||||||| || || |||||||||| | || |||| Sbjct 863592 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 863539 Score = 141 bits (156), Expect = 8e-29 Identities = 132/168 (79%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 30223 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30282 |||||| ||||||||||| || || || ||||||||||| || ||||| ||||||||||| Sbjct 863009 CATGTCTGTGTACTCTGCACCAAAGTGTCTCCACTGGAAGCCATACACGGGTCCCAGGTC 862950 Query 30283 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30342 || || || || | ||| || ||||||| ||||||| || ||||||||||| Sbjct 862949 GCCTTCCTCTCTATCTGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCGTC 862890 Query 30343 CCAGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 ||| ||||| || || |||||||||||||| |||| ||||| || || Sbjct 862889 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC 862842 >seq90 Length=1194800 Score = 102 bits (112), Expect = 7e-17 Identities = 76/89 (85%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 110560 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACGCG 110619 ||||| |||||||||||||||| | ||| ||||||||||| |||| ||| |||||| | Sbjct 223833 AGTCTAACAGGATGCCACGGCAGCTTTCCATTGTTCCCGATACCCAGGTCAGGACACACC 223774 Query 110620 GCCACGATACCGTTCAGAATGAGGGGCAT 110648 ||||| ||||||||||||||| ||| ||| Sbjct 223773 GCCACAATACCGTTCAGAATGCGGGACAT 223745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406279232691048