Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_028657.1 Length=60919 Score E Sequences producing significant alignments: (Bits) Value seq120 242 1e-59 >seq120 Length=812315 Score = 242 bits (268), Expect = 1e-59 Identities = 237/305 (78%), Gaps = 3/305 (1%) Strand=Plus/Plus Query 7277 GAGGTGTTAACAAAGTCATTCTGGTTGGTAACGTCGGTGGTGACCCGGAAACCCGCTACA 7336 |||| || |||||||| ||||| || || |||| ||| || ||||||||| |||||||| Sbjct 48163 GAGGCGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACA 48222 Query 7337 TGCCCAACGGCAATGCGGTGACCAACATCACCCTCGCCACCAGCGAGAGCTGGAAGGACA 7396 || |||||||| || || || ||||| ||||| ||||||||||| |||||||| || | Sbjct 48223 CCCCGAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATA 48282 Query 7397 AGCAGACCGGCCAGCAACAGGAACGCGCCGAGTTCCACCGCGTGGTGTTCTTCGGTCGCC 7456 |||||||||||||||| ||||| || |||||| |||||||| ||||||||||| Sbjct 48283 AGCAGACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGA 48342 Query 7457 TGGCGGAGATCGCCGGCGAGTACCTGCGCAAGGGTTCCCAGGTCTACGTCGAAGGCAGCC 7516 | || || ||||| || ||||| ||||| || || |||| |||||||||||||| | Sbjct 48343 TCGCCGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGCCAGTGCTACGTCGAAGGCACTC 48402 Query 7517 TGCGCACCCGCAAGTGGCAGGCTCAGGACGGCCAGGACCGATACACCACCGAGGTAATCG 7576 | ||||||||| |||| || | ||||| | | || |||||||||||| | ||| Sbjct 48403 TCCGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCG 48459 Query 7577 TCGAC 7581 ||||| Sbjct 48460 TCGAC 48464 Score = 82.4 bits (90), Expect = 3e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 53597 ACGCTGCCGATCTCTCCGTCCCGGTTCTTCCGGATCAGGATTTCGCCGATACCCTTCCTG 53656 ||| | ||| | || |||| ||||| ||| | || | | ||| | | ||||| Sbjct 51728 ACGGTACCGGTTTCACCGTTCCGGTGCTTGCCGAGGATCAACTCGGCAACCCCCTTGTAC 51787 Query 53657 TCGCTGTTCGGGAAATAGACTTCATCGCGGTACACGAACATGACGATGTCGGCGTCTTGC 53716 || ||| |||| ||||| || || || || |||||||||| |||||| ||||| ||| Sbjct 51788 TCAGTGTCCGGGTTGTAGACCTCGTCTCGATAGACGAACATGATGATGTCCGCGTCCTGC 51847 Query 53717 TCAATGGCGCCGGACTCGCGCAGGTCGCTGAGGACCGGACGCTTGTCGGGGCG 53769 || || ||||||||||| |||| ||| | || || ||||||| ||| || Sbjct 51848 TCGATCGCGCCGGACTCCCGCAAGTCTGCGTTCACAGGGCGCTTGTTGGGCCG 51900 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194804638969468