Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq95 131 2e-25 >seq95 Length=1145539 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 ||||||||||||| || |||||||| |||||||| |||||||||||||||| | Sbjct 862855 CCAAGGAGCTCTCTGAGAAAGGAGTGAAGATTTGGGACGCCAACGGGTCTCGAGACTTCC 862914 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 ||||||| | |||||| || | | ||||| |||||| |||| || || || || |||| Sbjct 862915 TGGACAATCTCGGGTTCACAGATAGAGAGGAAGGCGACCTGGGACCCGTGTATGGCTTCC 862974 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 |||||||||||||||| || ||||| Sbjct 862975 AGTGGAGACACTTTGGTGCAGAGTA 862999 Score = 131 bits (144), Expect = 2e-25 Identities = 116/145 (80%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 ||||| || |||||||||||||||||||| || || || || |||| |||||| ||||| Sbjct 862999 TACTCTGCACCAAAGTGTCTCCACTGGAAGCCATACACGGGTCCCAGGTCGCCTTCCTCT 862940 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | || |||||| | |||||||| |||||||||||||||| |||||||| |||||| Sbjct 862939 CTATCTGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCGTCCCAAATCTTC 862880 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || || ||||||||||||| Sbjct 862879 ACTCCTTTCTCAGAGAGCTCCTTGG 862855 Score = 111 bits (122), Expect = 1e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 34577 ATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTC-GCGAATGGGGAGCTGTC 34635 ||||| || ||||| |||||| |||| || || |||||||| |||| ||| |||||||| Sbjct 863552 ATGGCTCTGCCCCCCTGCCACGCCCTGTGTCAGTTCTACGTGTGCGA-TGGCGAGCTGTC 863610 Query 34636 CTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAACATTGCTAG 34695 || ||||| || || || || || || ||||| | |||||||| ||||| || || || Sbjct 863611 GTGTCAGCTGTACCAGCGCTCAGGTGATATGGGCCTCGGGGTGCCTTTCAATATCGCCAG 863670 Query 34696 TTACGCTCTGCTCACGTACATGATCGCTCA 34725 || || || || || ||||||||||| || Sbjct 863671 CTATGCACTTCTTACCTACATGATCGCACA 863700 Score = 111 bits (122), Expect = 1e-19 Identities = 116/150 (77%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || ||||||||||| || || || || || || || || ||||| |||||||| | ||| Sbjct 863700 TGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGCACCCCGAGGCCC 863641 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGC-GACGTAGAATTG 6738 || || || || || || || ||||| || |||||||| ||| |||| |||||||| || Sbjct 863640 ATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCA-TCGCACACGTAGAACTG 863582 Query 6739 GCAGAGGGTGTGGCACGGGGGGAGCGCCAT 6768 || |||| |||||| ||||| || ||||| Sbjct 863581 ACACAGGGCGTGGCAGGGGGGCAGAGCCAT 863552 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448227132955680