Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq331 179 9e-40 seq10 95.1 3e-14 >seq331 Length=323222 Score = 179 bits (198), Expect = 9e-40 Identities = 167/212 (79%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || ||||||||||| || | ||||| | |||||| Sbjct 7489 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCGGAGAGGGTGCGGCCATCT 7548 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||| ||| Sbjct 7549 TCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 7608 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| | |||||||| || ||||| ||| Sbjct 7609 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGCTGGGCTCAACCTCCAGGGTGATGGTC 7668 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| ||||| | |||||| Sbjct 7669 TTGCCGGTGAGGGTCTTGACAAAGATCTGCAT 7700 Score = 176 bits (194), Expect = 1e-38 Identities = 168/215 (78%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || |||||||| || || | ||||| | |||||| Sbjct 7717 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCT 7776 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| || |||| |||||||| ||| Sbjct 7777 TCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCGGGGGGAATGCCTTCCTTATCC 7836 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || ||||||||| | || ||||| || ||||| ||| Sbjct 7837 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCGACCTCAAGGGTGATGGTC 7896 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| ||||| | |||||| || Sbjct 7897 TTGCCGGTGAGGGTCTTCACAAAGATCTGCATGTT 7931 Score = 143 bits (158), Expect = 6e-29 Identities = 152/199 (76%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||||||||| || |||||||| || ||||| || || || | ||||| | |||||| Sbjct 11292 AGGACAAGGTGGAGGGTGGACTCCTTCTGGATATTGTAGTCGGAGAGGGTGCGGCCATCT 11351 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||| |||||||| || ||||| || | || |||||||| |||| |||||||| ||| Sbjct 11352 TCCAGTTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTATCC 11411 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 |||||||| || || || || || |||||| ||| |||||||| || ||||| Sbjct 11412 TGGATCTTGGCCTTGACATTCTCAATAGTGTCA---CTTGGCTCAACCTCAAGGGTGATG 11468 Query 211080 GTCTTTCCCGTGAGAGTCT 211098 ||||| || || || |||| Sbjct 11469 GTCTTGCCGGTCAGGGTCT 11487 Score = 131 bits (144), Expect = 4e-25 Identities = 131/170 (77%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 210948 AGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGA 211007 ||||| | |||||||||||||||||||| || ||||| || | || |||||||| ||| Sbjct 12941 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 13000 Query 211008 ACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACC 211067 | |||||||||||||| || || ||||| || || |||||||| | || ||| Sbjct 13001 ATGCCTTCCTTGTCCTGAATTTTAGCCTTCACATTCTCAATGGTGTCGCTGGGCTCGACC 13060 Query 211068 TCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || ||||| ||||| ||||| | |||||| || Sbjct 13061 TCAAGGGTGATGGTCTTGCCAGTGAGGGTCTTGACAAAAATCTGCATGTT 13110 >seq10 Length=6703581 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 139822 GGAAGAGGAGGACAATCTGCTCTGCGTTTTGAAAGACTTCGAAAGGAAAAGAGGCACAAC 139881 || |||||||| || |||||||||||||||| | || ||| ||| || || |||||| Sbjct 6288531 GGGAGAGGAGGGCAGTCTGCTCTGCGTTTTGCTCGTCTGAGAATGGAGAAAAGACACAAC 6288590 Query 139882 TACTTGAGAAAAGTTGCAGAGAACGCAATACAGTGTTTTAT---CAAAGACAACAAGTGT 139938 || |||||||||| || |||| || | ||| ||| | ||| |||| |||| | Sbjct 6288591 TATGTGAGAAAAGTGGCTGAGACGGCTGTCCAGCTCTTTGTGTCCAACGACA--AAGT-T 6288647 Query 139939 TTTGTTTCTGGTATTGTTTTGGCAGGTTCCGCAGAGTTCAAGACAAAGCTCCTGGAATCT 139998 ||| | || || || ||||| || || || || ||||||||| ||||| | ||| Sbjct 6288648 AATGTGGCGGGAATGGTCTTGGCTGGCTCTGCCGACTTCAAGACAGAGCTCAGCCAGTCT 6288707 Query 139999 GACTTTTTTGACCC 140012 ||| | || ||||| Sbjct 6288708 GACATGTTCGACCC 6288721 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159058523809310