Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq103 168 5e-37 seq95 152 4e-32 >seq103 Length=968675 Score = 168 bits (186), Expect = 5e-37 Identities = 230/321 (72%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 68997 CACCTACACAGTCCAGAGGGGTCCAAACTGACCATAGGACCCGTTGAGGACACAGAGTAT 69056 ||| || | ||||||| || ||| ||||| |||||| | | || ||||| || Sbjct 787302 CACTTAAAGAGTCCAGCTGGCACCACGCTGACGATAGGAAACCTGGATGACACCATATAC 787243 Query 69057 AAAGACAGGCCTGCAGTGGTGAACGGATGGGGAAAGTTTTATATCCCCACCGCCGTGACG 69116 ||| | | |||| || |||||| || |||||||| || || |||| | || | Sbjct 787242 AAACAGAAGCCTAGAGAGGTGAATGGGTGGGGAAAATTCTACCTCCCTGACATAGTAAAC 787183 Query 69117 ATGCAGGTCATCGGTTATGTGACGGGAACTCCATACCAATGTGACCAGCTTGTCCTGATG 69176 |||||||| || ||| ||| ||| || | | || ||||||||||| || |||||| Sbjct 787182 ATGCAGGTTATAGGTGTAGTGGAGGGGACCTCGTGCCCGTGTGACCAGCTCGTTCTGATG 787123 Query 69177 ACCTGCGAGGACCAGAAGGTGTACGGCTATGACGGAGACGAGCTGCATGTGGTGGCTAAC 69236 ||||| || ||| || || ||||||||||| ||||| |||||||||||||||||| Sbjct 787122 ACCTGTGAAGACAGAAAAGTTTACGGCTATGATGGAGAAGAGCTGCATGTGGTGGCTGCA 787063 Query 69237 TGTCTGGATCAGATGGGGGAAGAAGGAATAGCCTATCCTGCATTCCAGAGCTATTATCAT 69296 | ||| || | | | || || |||| ||||| |||| | |||||||||| | Sbjct 787062 AGCCTGATGGAGCTAGATCACGAGGGGATAGAGTATCCAGCATCCAAGAGCTATTACAAC 787003 Query 69297 GGGGAGGCCTTCAAACATATG 69317 ||||||||||||||||||||| Sbjct 787002 GGGGAGGCCTTCAAACATATG 786982 >seq95 Length=1145539 Score = 152 bits (168), Expect = 4e-32 Identities = 138/174 (79%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 || || |||| ||| || |||||||| || || || | ||||||||||| || || || Sbjct 863712 AGTCCTGTGATGTGTGCGATCATGTAGGTAAGAAGTGCATAGCTGGCGATATTGAAAGGC 863653 Query 27268 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCATCGCTT 27327 |||||||| ||||| || || || | |||||| ||||||||||| ||||| ||||||| Sbjct 863652 ACCCCGAGGCCCATATCACCTGAGCGCTGGTACAGCTGACACGACAGCTCGCCATCGCAC 863593 Query 27328 ACGTAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCT 27381 ||||| |||||||| | ||||||||| || || |||||||||| | || |||| Sbjct 863592 ACGTAGAACTGACACAGGGCGTGGCAGGGGGGCAGAGCCATGAAGGGCAGGTCT 863539 Score = 132 bits (146), Expect = 4e-26 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 27489 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTC 27548 |||||| ||||||||||| || || || ||||| ||||| || ||||| ||||||||||| Sbjct 863009 CATGTCTGTGTACTCTGCACCAAAGTGTCTCCACTGGAAGCCATACACGGGTCCCAGGTC 862950 Query 27549 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 27608 || || || || | ||| || ||||||| ||||||| || ||||||||||| Sbjct 862949 GCCTTCCTCTCTATCTGTGAACCCGAGATTGTCCAGGAAGTCTCGAGACCCGTTGGCGTC 862890 Query 27609 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 27656 ||| ||||| || || ||||| |||||||| |||| ||||| || || Sbjct 862889 CCAAATCTTCACTCCTTTCTCAGAGAGCTCCTTGGCATTTGTTGATCC 862842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369478855795514