Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq39 158 2e-33 seq24 111 2e-19 seq719 89.7 7e-13 >seq39 Length=2776481 Score = 158 bits (174), Expect = 2e-33 Identities = 176/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 8351 TTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAG 8410 ||||| || ||| || ||| ||| ||||| |||||||||||||||||| |||||||| Sbjct 1662006 TTGACAATGTTGAAGCCGACGCTTCCTCCGAATGTGCTGGGCTTCCAGTACTCCGGGGAG 1661947 Query 8411 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTC 8470 |||||| ||| |||| | |||||||||||| | || ||||||| ||| | ||| | Sbjct 1661946 CAGATGGGGTTTCCCATTAAGCCTTTGAGGGAATAAGGGGCCCCCATCTCCACCATGGTT 1661887 Query 8471 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACA 8530 || || |||||| |||| || | ||| || || ||||| | || | ||| ||||||||| Sbjct 1661886 TCCCCAAAGATGCCGTTAGGCCTGGGTTTCTCTACCAACAGACCTGGGTAGAGCTCCACA 1661827 Query 8531 GCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || || | || |||||| | || ||| | || || ||||| || ||||||| Sbjct 1661826 GCGTCAATGTTTCCGTACATCTCCTCGAGCACTGCGGCCATCTCTTTCTCTCCTG 1661772 Score = 138 bits (152), Expect = 2e-27 Identities = 127/161 (79%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || || | |||||| || ||||||||||| || |||||| |||| || || || Sbjct 1660250 TCACCAATCAGGATGAGCCGTGTGGTCTGGAAGAGCCTTTCGTCATTCCAGTCAGGGTGA 1660191 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATC 9351 | | |||| ||||| ||||||| ||||||||||| |||||||| |||||||||||| Sbjct 1660190 ACCTCCTTCAACACATCACACACCCGGTTGTGTTCCCGCAGCCAGATGGTGGCGTACATC 1660131 Query 9352 ATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGC 9392 || || || || |||||||| |||||||| ||||| ||||| Sbjct 1660130 ATCAGACCGGGGACCAGGCCGAAAGCCTCATGACCCACAGC 1660090 >seq24 Length=3976164 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 8372 TCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGG 8431 ||||| || |||||||| |||||||||||| | || |||||||| ||| ||| ||| Sbjct 729231 TCTCCCCCAAAGGTGCTAGGCTTCCAGTACTCAGGAGAGCAGATCGGGTTTCCCAACAGG 729172 Query 8432 CCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGA 8491 ||||| || ||||| ||||| |||| || | ||||||||||| || ||| ||| | Sbjct 729171 CCTTTCAGAGAGAAGGGAGCACCCATTTCCACCATGCTCTCACCAAATATGCTGTTACTA 729112 Query 8492 CGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAG 8550 || | || |||| | || || | ||| | ||||| ||| |||| ||| ||||| || Sbjct 729111 CGTGTTTTCTCCAGTATGACGCCTGGGTAAAACTCCAAAGCATCGATGTCACCGTAGAG 729053 >seq719 Length=144483 Score = 89.7 bits (98), Expect = 7e-13 Identities = 186/277 (67%), Gaps = 0/277 (0%) Strand=Plus/Minus Query 8271 GCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTA 8330 |||||||| || |||| ||||| | | |||||| |||| ||| |||||| | Sbjct 100188 GCTCCTCAGTTGGTACTCTAAACGCCACATAAGGACACGTCTTGGTGTTCAGACAGACCA 100129 Query 8331 GAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGG 8390 | || | || || || || || | || || || | || || |||||||| | Sbjct 100128 GCTTCTTTAGCGTAGCCGAGTTCACTATGTCAAAGCCGACTTTACCTCCAAAGGTGCTCG 100069 Query 8391 GCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAG 8450 |||||||||| | || || || || ||| ||| |||||||| |||||||| || | Sbjct 100068 GCTTCCAGTATTCAGGAGAACATATAGGGTTTCCCAGCAGGCCTTTAAGGGAGAAGGGGG 100009 Query 8451 CCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGA 8510 | |||| ||| | |||||||| || || |||||| | | || || |||| || | Sbjct 100008 CACCCATCTCCACCATGCTCTCTCCAAATATGGCGCCCGCTCTGGTTTTCTCCAACATCA 99949 Query 8511 ATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTA 8547 | |||| || | || |||| |||| ||| ||||| Sbjct 99948 AACCGGGATAAAATTCAACAGAGTCGATGTCACCGTA 99912 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 716820399717760