Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Miichthys_20miiuy_20[genbank_20GCA_5F001593715.1_202016-03-17] 6,294 sequences; 619,300,777 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq331 136 1e-26 >seq331 Length=323222 Score = 136 bits (150), Expect = 1e-26 Identities = 156/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || ||||| || ||||| || || || |||||||| ||||| || || ||| Sbjct 7925 CAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGTG 7868 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| || || || ||||||| Sbjct 7867 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGC 7808 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| ||||| || ||||| |||||||| | || || |||| || ||| Sbjct 7807 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAACA 7748 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 7747 TCCAGAAGGAGTCCACCCTCCACCTTGT 7720 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || || || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 7697 CAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTTGA--GCCCAGCG 7640 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||||||||| ||||| ||||| || ||||| || || || ||||||| Sbjct 7639 ACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAGGAAGGCATTCCCCCCGACCAGC 7580 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | | || ||||| || || || ||||| |||||||| | || || |||| |||||| Sbjct 7579 AGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTATAACA 7520 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || ||||| Sbjct 7519 TCCAGAAGGAGTCCACCCTCCACCTTGT 7492 Score = 113 bits (124), Expect = 1e-19 Identities = 133/178 (75%), Gaps = 4/178 (2%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || ||||| || || || ||||| || || || |||||||| ||||| || || ||| Sbjct 13104 CAGATTTTTGTCAAGACCCTCACTGGCAAGACCATCACCCTTGAGGTCGA--GCCCAGCG 13047 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||| ||||| || || || ||||||||||| ||||| || || || ||||||| Sbjct 13046 ACACCATTGAGAATGTGAAGGCTAAAATTCAGGACAAGGAAGGCATTCCCCCTGACCAGC 12987 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 | | || ||||| ||||| || ||||| |||||||| | || || |||| || || Sbjct 12986 AGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCCGACTACAA 12929 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203634128859036