Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq2 324 2e-83 seq18 84.2 3e-11 >seq2 Length=17630497 Score = 324 bits (358), Expect = 2e-83 Identities = 873/1333 (65%), Gaps = 13/1333 (1%) Strand=Plus/Minus Query 53086 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 53145 |||||| || || || ||||| | |||||| || | || | || ||||| ||||| Sbjct 6622711 ATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGATT 6622652 Query 53146 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 53205 |||| || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 6622651 CACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTC 6622592 Query 53206 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 53265 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 6622591 AATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAG 6622532 Query 53266 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 53325 | ||| || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 6622531 CAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCACAG 6622472 Query 53326 ATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGAT 53383 | | || | | | || || || || || ||| || || Sbjct 6622471 CTTGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG 6622414 Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| | ||||| ||||| || || || | || || || || || |||| | || Sbjct 6622413 CCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGCG 6622354 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 | || || ||||| || ||||| | | || || || || || |||| || ||| Sbjct 6622353 GCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTCGAAT 6622294 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 53563 | | | | ||| || || | |||||| || ||||| ||||| || || || || | Sbjct 6622293 GCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCGG 6622234 Query 53564 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 53623 || | ||| || || | || || || || | || || | ||||||||||| || || Sbjct 6622233 TGACGCTTGTTGGACTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCTTG 6622174 Query 53624 TTGAGGTTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCA 53683 || | ||| |||||||||||||| ||||| ||||| ||| ||||| |||| Sbjct 6622173 TTCAAATTTTTGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAA-GTCCG 6622115 Query 53684 -TCTA---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATT 53739 ||| | ||| ||||||| | ||| || || ||||||||||| ||||| ||||| | Sbjct 6622114 CTCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCTCGTC 6622055 Query 53740 AGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATT 53799 | | | || | || || || ||||| || || || | ||||||||| || | || Sbjct 6622054 ACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTT 6621995 Query 53800 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTC 53859 || || || ||||| |||| || | || || || || ||| ||||||| |||||||| Sbjct 6621994 CTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTC 6621935 Query 53860 AATCTGGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCT 53919 ||||||| || || || || | ||| | ||||||| | | | || | Sbjct 6621934 CGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCTGAGCCTTCACCACACGCTTCACCCG 6621875 Query 53920 CTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCC 53977 |||| | || ||| ||||| | || || ||||| || ||||| | |||| Sbjct 6621874 GCCTTCTTTCTCATATGAGGTGTAGAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCC 6621817 Query 53978 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 54037 | || || ||||| | |||||||||| ||||| || ||| || ||| | ||| Sbjct 6621816 AGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTTC 6621757 Query 54038 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 54097 || || || || || ||||| || || || || ||||||| || || ||||| ||| Sbjct 6621756 ATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTT 6621697 Query 54098 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 54157 ||||| || || || || || ||||| | | | |||| | ||||| || |||||||| Sbjct 6621696 CCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTAC 6621637 Query 54158 ATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 54217 |||| | | |||| |||| ||||| || ||||| || | ||| | || ||||| || Sbjct 6621636 ATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTG 6621577 Query 54218 TAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTT 54277 || ||||||| ||| || | | ||||||||| || ||||| |||| ||| ||||| Sbjct 6621576 TACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC 6621517 Query 54278 CCACTGGCACGAATATTACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAAT 54337 || | | || || || | || | || || || || ||| || ||||| | Sbjct 6621516 CCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATGAGG 6621457 Query 54338 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 54397 ||||| | || | ||||| || || ||||| || || || || ||||| || || Sbjct 6621456 GCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGG 6621397 Query 54398 AAACAGCTAGACA 54410 || ||||| |||| Sbjct 6621396 AAGCAGCTGGACA 6621384 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 52875 TCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 52934 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 52935 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 52994 |||| || || || || ||||||||||| || | || || ||||| || || | |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 52995 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 53045 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq18 Length=14161719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 54028 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 54087 |||||||||||| ||||| || || ||||| || || | || | ||||||| ||| || Sbjct 3646043 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTG 3646102 Query 54088 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 54147 ||||| || ||||| ||||| || | || | ||| | | | ||||| ||||||||| Sbjct 3646103 CTCCTCTTTGCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGG 3646162 Query 54148 TTCCAAGTA 54156 |||| ||| Sbjct 3646163 CTCCAGGTA 3646171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680395720960