Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33 96.9 3e-15 seq3 96.9 3e-15 seq6 84.2 2e-11 >seq33 Length=5647056 Score = 96.9 bits (106), Expect = 3e-15 Identities = 147/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| || |||||||| || | ||||| ||| || | Sbjct 6192 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 6133 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | |||||| || || || |||||||||||||| | Sbjct 6132 GCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 6073 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | |||||| || ||| ||||| | ||| | || |||| Sbjct 6072 TCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 6013 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 6012 CAGTCAGGGTCTTGACAAAGATCTGCAT 5985 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| || |||||||| || | ||||| ||| || | Sbjct 6420 CAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 6361 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || || |||| || | ||||| || || || |||||||||||||| | Sbjct 6360 GCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 6301 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | |||||| || ||| ||||| | ||| | || |||| Sbjct 6300 TCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 6241 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 6240 CAGTCAGGGTCTTGACAAAGATCTGCAT 6213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/208 (70%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || |||||||| || | ||||| ||| || | Sbjct 8248 CAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCA 8189 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||||||| || || |||| || | ||||| || || || |||||||||||||| | Sbjct 8188 GCTGTTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGA 8129 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | ||| | |||||| || ||| ||||| | ||| | || |||| Sbjct 8128 TCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGC 8069 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | ||||| || || ||||| |||||||| Sbjct 8068 CAGTCAGGGTCTTGACAAAGATCTGCAT 8041 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || ||||| || ||||| || || | ||||| ||| || | Sbjct 12002 CAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGAGAGGGTGCGACCATCTTCCA 11943 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || ||||| |||| || | ||||||||| || || |||||||||||||| | Sbjct 11942 GCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGA 11883 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || || ||||| | ||| | || |||| Sbjct 11882 TCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGC 11823 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| || || || || ||||||||| Sbjct 11822 CAGTCAGGGTCTTCACGAAGATCTGCATG 11794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| || || || || || ||||| || || | ||||| ||| || | Sbjct 12230 CAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 12171 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 ||| || ||||| |||| || | ||||||||| || || |||||||||||||| || Sbjct 12170 ACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGAA 12111 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 | || || || | || | |||||| || ||| ||||| | || | || |||| Sbjct 12110 TCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGC 12051 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCATG 118739 | ||||| || || ||||| ||||||||| Sbjct 12050 CAGTCAGGGTCTTAACAAAGATCTGCATG 12022 >seq3 Length=24902066 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||||||||| | ||||| ||| || ||||| ||||| Sbjct 14702581 GTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCG 14702640 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || ||||| ||||| || ||||| || || || Sbjct 14702641 GCAAAGATCAGCCTCTGCTGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTC 14702700 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | || | |||||| || ||| ||||| | ||| | |||||||| || || || Sbjct 14702701 ACATTGTCAATGGTGTCACTGGCCTCAACCTCAAGGGTAATGGTTTTGCCTGTGAGGGTC 14702760 Query 118722 TTTACAAAAATCTGCATG 118739 || || || ||||||||| Sbjct 14702761 TTGACGAAGATCTGCATG 14702778 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/200 (71%), Gaps = 4/200 (2%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || |||||||| ||||||||||| | ||||| ||| || ||||| ||||| Sbjct 14702353 GTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCG 14702412 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGT-CTGTAATTTTTTGT-T 118659 || |||| || | |||||| || || || ||||| ||||||| ||| | | || || | Sbjct 14702413 GCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGA--TCTTGGTCT 14702470 Query 118660 TAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAG 118719 | || | || || ||||| || ||| ||||| | || | || ||||| || || | Sbjct 14702471 TCACGTTCTCCACAGTGTCGCTGGGCTCTACCTCAAGAGTGATGGTCTTGCCTGTGAGGG 14702530 Query 118720 TTTTTACAAAAATCTGCATG 118739 | || || ||||| |||||| Sbjct 14702531 TCTTGACGAAAATTTGCATG 14702550 >seq6 Length=17716291 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| || ||||| || || |||||||| || | ||||| ||| || ||||| Sbjct 10620539 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTG 10620598 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 || || || |||| ||||||||||| || | || ||||||||||| || || || Sbjct 10620599 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTT 10620658 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | || | ||| || | ||| ||||| | ||| | || ||||| || Sbjct 10620659 GGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 10620718 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 ||| || || ||||| |||||||| Sbjct 10620719 CAGGGTCTTGACAAAGATCTGCAT 10620742 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| || | ||||| ||| || Sbjct 10619621 CACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTC 10619680 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| || || || |||| ||||||||||| || | || ||||||||||| || Sbjct 10619681 AAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTG 10619740 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | || | ||| || | ||| ||||| | ||| | || || Sbjct 10619741 GATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTT 10619800 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| ||||| || || || || |||||||| Sbjct 10619801 GCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801044865984