Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq33 113 3e-20 seq3 113 3e-20 seq6 98.7 6e-16 >seq33 Length=5647056 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || ||||||||| ||||||||||| || Sbjct 6211 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6152 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 6151 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 6092 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | || | | || || Sbjct 6091 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 6032 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 6031 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 5985 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || ||||||||| ||||| ||||| || Sbjct 12021 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGAG 11962 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGG 34281 || || | || |||| ||||||||| || || || |||| |||||| || | |||| Sbjct 11961 AGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGG 11902 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | || | ||| | | ||| || Sbjct 11901 -ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCAAC 11843 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || ||||| ||||||||||| Sbjct 11842 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 11795 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || ||||||||| ||||||||||| || Sbjct 6439 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6380 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| |||||||| ||| Sbjct 6379 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGG 6320 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | | | || | || | | || || Sbjct 6319 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACC 6260 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 6259 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6213 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || ||||||||| ||||||||||| || Sbjct 6667 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6608 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| |||||||| ||| Sbjct 6607 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGG 6548 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | || | || | | || || Sbjct 6547 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACC 6488 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || || || || |||||||||||||| Sbjct 6487 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6441 Score = 98.7 bits (108), Expect = 6e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||| ||||| || || ||| | || |||||||||||||| || || Sbjct 12214 TTCCTTCTGGATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAA 12155 Query 34258 AATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGAT 34316 || |||| |||||| || | |||| | || ||||||||| ||||| ||| | || Sbjct 12154 GATCAGCCTCTGCTGATCAGGCGGG-ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACAT 12096 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | || || |||| |||||||| ||||| || || || || | Sbjct 12095 TCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAA 12036 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 12035 CAAAGATCTGCAT 12023 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || ||| ||||| ||||||||||| || Sbjct 11793 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 11734 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| || || || |||| ||||||||| ||| Sbjct 11733 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11674 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | |||||||| ||||| ||| | || | || | || | | || || Sbjct 11673 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 11614 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || || |||||||||||||| Sbjct 11613 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 11567 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || ||| | || |||| ||||||||| || || Sbjct 6860 TTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAA 6801 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| |||||||| ||| | || |||||||| ||||| ||| | | Sbjct 6800 GATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 6741 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || |||| |||||||| ||||| || || || || || Sbjct 6740 TTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 6681 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 6680 AAAGATCTGCAT 6669 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||| || || ||| | || |||| ||| ||||| || || Sbjct 8232 TTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAA 8173 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 || |||| |||||||| ||| | || ||||||||| ||||| ||| | | Sbjct 8172 GATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 8113 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | || | | || || |||| |||||||| ||||| || || || || || Sbjct 8112 TTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGAC 8053 Query 34378 AAAGATCTGCAT 34389 |||||||||||| Sbjct 8052 AAAGATCTGCAT 8041 >seq3 Length=24902066 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| | ||| | ||| || || || | || |||||||| ||||||||||| || Sbjct 14702779 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 14702838 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || || | ||||||||| || || || |||| ||||||||| ||| Sbjct 14702839 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702898 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || || ||||| ||||| ||| | || | | || | || | | ||| || Sbjct 14702899 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACC 14702958 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| ||||| ||||| |||||||||||||| Sbjct 14702959 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 14703005 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| ||||| || | || ||||||||| ||||| |||||||| || || | || Sbjct 14701081 CAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTGCGACCATC 14701140 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||||||||| || || || || | ||||||||| || | || |||||||| Sbjct 14701141 CTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGAATGCCTTCCTTGTC 14701200 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | || | | || | || | | || || || | || ||||| Sbjct 14701201 CTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACCTCTAGGGTAATGGT 14701260 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| ||||| || || |||||||||||||| Sbjct 14701261 CTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 14701293 >seq6 Length=17716291 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 10620552 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 10620611 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| | ||| | || |||||| || ||||| ||| | | Sbjct 10620612 ATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTC 10620671 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || || ||| Sbjct 10620672 TCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 10620731 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 10620732 AAGATCTGCATC 10620743 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||| ||||| | || || ||||| ||||||||||| || || ||| | || Sbjct 10619619 AGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCT 10619678 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||||||| || || || || ||||||||||| | ||| | || |||||| || Sbjct 10619679 TCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCC 10619738 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | || | ||| | | || || |||| |||||||| Sbjct 10619739 TGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTC 10619798 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || || || ||||||||||| Sbjct 10619799 TTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 10619868 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 10619927 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| | ||| | || |||||| || ||||| ||| | | Sbjct 10619928 ATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTC 10619987 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || || || Sbjct 10619988 TCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACG 10620047 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 10620048 AAGATCTGCAT 10620058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 10620096 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 10620155 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| | ||| | || |||||| || ||||| ||| | | Sbjct 10620156 ATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTC 10620215 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || || || Sbjct 10620216 TCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACG 10620275 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 10620276 AAGATCTGCAT 10620286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || ||| | || || | ||||||||| || || Sbjct 10620324 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAG 10620383 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || ||||||||||| | ||| | || |||||| || ||||| ||| | | Sbjct 10620384 ATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTC 10620443 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | ||| | | || || |||| |||||||| ||||| || || || || || Sbjct 10620444 TCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACG 10620503 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 10620504 AAGATCTGCAT 10620514 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050139333120