Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq33 102 6e-17 seq6 100 2e-16 seq3 100 2e-16 >seq33 Length=5647056 Score = 102 bits (112), Expect = 6e-17 Identities = 142/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| | || ||||| ||||| ||||| || Sbjct 8231 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAG 8172 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | |||||||||||| || || ||| || Sbjct 8171 ATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTT 8112 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| ||||| ||||| ||| Sbjct 8111 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 8052 Query 45326 AAGATTTGCATGTTGCCTC 45344 ||||| ||||| ||||| Sbjct 8051 AAGATCTGCATACCGCCTC 8033 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| | || ||||| || || ||||| || Sbjct 11757 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 11698 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | ||| ||||||||| || || ||| || Sbjct 11697 ATCAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 11638 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||| | ||| || |||||||| ||||| ||||| ||| Sbjct 11637 TCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 11578 Query 45326 AAGATTTGCAT-GTTGC 45341 ||||| ||||| ||||| Sbjct 11577 AAGATCTGCATGGTTGC 11561 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || ||| | || ||||| || || ||||| || Sbjct 6175 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 6116 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | |||||||||||| || || ||| || Sbjct 6115 ATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTT 6056 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| ||||| ||||| ||| Sbjct 6055 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 5996 Query 45326 AAGATTTGCAT-GTTG 45340 ||||| ||||| |||| Sbjct 5995 AAGATCTGCATAGTTG 5980 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || ||| | || ||||| || || ||||| || Sbjct 6403 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 6344 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | |||||||||||| || || ||| || Sbjct 6343 ATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTT 6284 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| ||||| ||||| ||| Sbjct 6283 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 6224 Query 45326 AAGATTTGCATGTTGCCTC 45344 ||||| ||||| ||||| Sbjct 6223 AAGATCTGCATACCGCCTC 6205 Score = 93.3 bits (102), Expect = 3e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||||||||| || ||| | || ||||| || || ||||| || Sbjct 6859 TCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 6800 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | || ||||||||| || || ||| || Sbjct 6799 ATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 6740 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| ||||| ||||| ||| Sbjct 6739 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 6680 Query 45326 AAGATTTGCATGTTGCCTC 45344 ||||| ||||| ||||| Sbjct 6679 AAGATCTGCATACCGCCTC 6661 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||| ||||| || |||| | || ||||| || || || || || Sbjct 11985 TCTTTCTGGATGTTATAGTCAGAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAG 11926 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | |||||||||||| || || ||| || | Sbjct 11925 ATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTC 11866 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | || ||||||| ||| || |||||||| ||||| |||||||| Sbjct 11865 TCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACG 11806 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 11805 AAGATCTGCATG 11794 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 |||||||| ||||| ||||| || ||| | || |||| || || || || || Sbjct 12213 TCCTTCTGGATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAG 12154 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| || || || || | |||||||||||| ||| || ||| || | Sbjct 12153 ATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTC 12094 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| || || |||||||| ||||| ||||| ||| Sbjct 12093 TCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACA 12034 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 12033 AAGATCTGCATG 12022 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || ||| | || ||||| || || ||||| || Sbjct 6631 TCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAG 6572 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || || ||||| || || | || ||||||||| || || ||| || Sbjct 6571 ATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTT 6512 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | |||| | ||| ||||||| ||| || |||||||| ||||| ||||| ||| Sbjct 6511 TCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 6452 Query 45326 AAGATTTGCAT 45336 ||||| ||||| Sbjct 6451 AAGATCTGCAT 6441 >seq6 Length=17716291 Score = 100 bits (110), Expect = 2e-16 Identities = 147/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 10620539 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTG 10620598 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| | || | |||||||| ||| || || Sbjct 10620599 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTT 10620658 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | || | ||||||||||| ||| || |||||||| || Sbjct 10620659 GGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 10620718 Query 45313 CAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||| ||||| |||||||| ||||| ||| Sbjct 10620719 CAGGGTCTTGACAAAGATCTGCATCTTG 10620746 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || ||||||| | | || | ||| || ||| ||||||||| ||||||||||| Sbjct 10619604 CCCCCTCTCAGACGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10619663 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || || || || || ||||| || |||| ||||| ||||| | || Sbjct 10619664 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10619723 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | |||||||| ||| || || ||| || | | | | | || | ||||||| Sbjct 10619724 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10619783 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 |||| ||| || |||||||| ||||| ||||| || ||||| ||||| Sbjct 10619784 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 10619855 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTG 10619914 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| | || | |||||||| ||| || || Sbjct 10619915 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTT 10619974 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | || | ||||||||||| ||| || |||||||| || Sbjct 10619975 GGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 10620034 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||| ||||| Sbjct 10620035 CAGCGTCTTGACGAAGATCTGCAT 10620058 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 10620083 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTG 10620142 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| | || | |||||||| ||| || || Sbjct 10620143 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTT 10620202 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | || | ||||||||||| ||| || |||||||| || Sbjct 10620203 GGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 10620262 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||| ||||| Sbjct 10620263 CAGCGTCTTGACGAAGATCTGCAT 10620286 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| || ||| | || || || || Sbjct 10620311 GTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCAAGCTG 10620370 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || ||||| || |||| ||||| ||||| | || | |||||||| ||| || || Sbjct 10620371 CTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGGATGCCCTCCTTATCCTGGATCTT 10620430 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 ||| || | | | | | || | ||||||||||| ||| || |||||||| || Sbjct 10620431 GGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACCTCCAGGGTGATGGTCTTGCCAGT 10620490 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||| ||||| || ||||| ||||| Sbjct 10620491 CAGCGTCTTGACGAAGATCTGCAT 10620514 >seq3 Length=24902066 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| || || ||| || ||||| ||||| |||||| || || | || || Sbjct 14701997 ACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCCTCT 14702056 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| || || ||||| | || ||||||||| Sbjct 14702057 AGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCCTGG 14702116 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | || |||| | | |||| ||||||| ||| || |||||| Sbjct 14702117 ATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCAACCTCCAGGGTGATGGTCTTG 14702176 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATG 45337 || ||||| ||||| ||||||||||||||| Sbjct 14702177 CCAGTCAGGGTCTTGACAAAGATTTGCATG 14702206 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 || ||||| ||||||||||| || || | || ||||| || || || || || Sbjct 14701331 TCTTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAG 14701390 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 |||| || ||| ||||| || || | || ||||||||| || || || || | Sbjct 14701391 ATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTC 14701450 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | || |||| | |||| ||||| | ||| || |||||||| ||||| ||||| ||| Sbjct 14701451 TCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACA 14701510 Query 45326 AAGATTTGCATG 45337 ||||| |||||| Sbjct 14701511 AAGATCTGCATG 14701522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395048467236592