Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3 93.3 3e-14 seq33 91.5 1e-13 >seq3 Length=24902066 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || |||||||| || ||||| ||||||| | ||| | ||| Sbjct 14701538 AGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCC 14701597 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC- 18232 || | |||||||| ||| |||| || || || ||||| || | ||||||||| || Sbjct 14701598 TCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCC 14701657 Query 18233 -GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 || || ||| || || | |||||||||||| || ||| || | ||||||| Sbjct 14701658 TGGATCTTGGTT--TTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGG 14701715 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||| || || ||||| || ||||| Sbjct 14701716 TCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701749 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| || || || |||||||| || ||||| ||||||| | ||| | ||| Sbjct 14701766 AGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAGAGGGTTCGGCCATCC 14701825 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC- 18232 || | |||||||| ||| |||| || || || ||||| || | ||||||||| || Sbjct 14701826 TCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGGATGCCTTCCTTGTCC 14701885 Query 18233 -GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGC 18291 || || ||| || || | |||||||||||| || ||| || | ||||||| Sbjct 14701886 TGGATCTTGGTT--TTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGG 14701943 Query 18292 TTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | ||||| |||| || || ||||| || ||||| Sbjct 14701944 TCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701977 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/205 (70%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | ||| | |||||||| || Sbjct 14701319 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTTCGGCCATCTTCCAGCTGC 14701378 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC--GGCAATTT 18240 || || ||| |||| || || || || || || | ||||||||| || || || Sbjct 14701379 TTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTTGTCCTGGATCTTG 14701438 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 ||| || || | |||||||||||| || ||| || | ||||||| | ||||| | Sbjct 14701439 GTT--TTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGATGGTCTTGCCAG 14701496 Query 18301 TCAATGTTTTTACAAAAATTTGCAT 18325 ||| || || ||||| || ||||| Sbjct 14701497 TCAGGGTCTTGACAAAGATCTGCAT 14701521 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 ||||| || ||||||||||| |||||||| || | | || | |||||| | || Sbjct 14702347 TGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGC 14702406 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT-CGGCAATTTG 18241 || || ||| |||| || || || || || ||| | ||||||||| | | | | ||| Sbjct 14702407 TTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTCCTGGATCTTG 14702466 Query 18242 TTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGT 18301 | ||| || | | |||||||| | |||||| |||| |||||| | ||||| || Sbjct 14702467 GT-CTTCACGTTCTCCACAGTGTCGCTGGGCTCTACCTCAAGAGTGATGGTCTTGCCTGT 14702525 Query 18302 CAATGTTTTTACAAAAATTTGCAT 18325 | || || || ||||||||||| Sbjct 14702526 GAGGGTCTTGACGAAAATTTGCAT 14702549 >seq33 Length=5647056 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | || | |||||||| || Sbjct 6643 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 6584 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || ||||| || || ||| | ||||||||| || || | Sbjct 6583 TTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTG 6524 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 6523 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 6464 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 6463 AGGGTCTTGACAAAGATCTGCAT 6441 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | || | |||||||| || Sbjct 6415 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 6356 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || ||||| || || ||| | ||| ||||| || || | Sbjct 6355 TTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 6296 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 6295 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 6236 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 6235 AGGGTCTTGACAAAGATCTGCAT 6213 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| || Sbjct 6871 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 6812 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || ||||| || || ||| | ||||||||| || || | Sbjct 6811 TTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTG 6752 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 6751 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 6692 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 6691 AGGGTCTTGACAAAGATCTGCAT 6669 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| ||| Sbjct 8243 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGT 8184 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || ||||| || || ||| | ||| ||||| || || | Sbjct 8183 TTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 8124 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 8123 GCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 8064 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 8063 AGGGTCTTGACAAAGATCTGCAT 8041 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || |||||||| || ||||||||||| | | || | |||||||| || Sbjct 6187 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 6128 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | ||| ||||| || || | Sbjct 6127 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTG 6068 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| || | ||||||| | ||||| ||| Sbjct 6067 GCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTC 6008 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 6007 AGGGTCTTGACAAAGATCTGCAT 5985 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || || || ||||| || || ||||||||||| | | || | |||||||| || Sbjct 11769 TGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 11710 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 ||||| ||| |||| || || || || || ||| | |||||||| || || | Sbjct 11709 TTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTGTCCTGGATCTTG 11650 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| ||||||| |||||| |||| ||||||| | ||||| ||| Sbjct 11649 GCCTTCACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTC 11590 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | || || ||||| || ||||| Sbjct 11589 AGGGTCTTGACAAAGATCTGCAT 11567 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318331688240