Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq2 307 1e-78 seq390 87.8 2e-12 seq73 87.8 2e-12 seq4 84.2 3e-11 >seq2 Length=17630497 Score = 307 bits (340), Expect = 1e-78 Identities = 870/1336 (65%), Gaps = 19/1336 (1%) Strand=Plus/Minus Query 62324 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTT 62383 |||||| || || || ||||| | |||||| || | || | || ||||| || || Sbjct 6622711 ATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGATT 6622652 Query 62384 AACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62443 |||| ||||| ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 6622651 CACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTC 6622592 Query 62444 CACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62503 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 6622591 AATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAG 6622532 Query 62504 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAG 62563 | ||| || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 6622531 CAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCACAG 6622472 Query 62564 ATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGT 62616 | | || | | ||| || || || || || || ||| || Sbjct 6622471 CTTGGTGGGCGTCTTCTCCCACATGTCG-------TACTGGAGGATGCCCTTGCTGACGG 6622419 Query 62617 ACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTA 62676 || ||| | ||||| || || || || || | || || | || || |||| | Sbjct 6622418 GGGAGCCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCA 6622359 Query 62677 ATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTAT 62736 || | || || ||||| |||||||| | | || || || || || ||||| | Sbjct 6622358 GGGCGGCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTT 6622299 Query 62737 CAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAG 62796 | |||| | | | ||| || || | ||| || || ||||| ||||| || || || | Sbjct 6622298 CGAATGCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTG 6622239 Query 62797 GTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAA 62856 | | || | ||| || || | || || || || | || || | ||||||||||| | Sbjct 6622238 GCCGGTGACGCTTGTTGGACTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGA 6622179 Query 62857 TTTTATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATC 62916 | || || | |||| |||||||||||||| ||||| ||||| ||| ||||| Sbjct 6622178 TCTTGTTCAAATTTTTGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAAG 6622119 Query 62917 GCCCATCTA---TTACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCT 62973 || ||| | ||| ||||||| | ||| | || ||||||||||| ||||| |||| Sbjct 6622118 TCCGCTCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCT 6622059 Query 62974 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTA 63033 | | | | | || | || || || ||||| || || || | |||||| || || | Sbjct 6622058 CGTCACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCA 6621999 Query 63034 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 63093 || || || || ||||| |||| || | || || || || ||| |||| || |||| Sbjct 6621998 GGTTCTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAG 6621939 Query 63094 TTTCAATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTG 63152 |||| |||| || || || || || | ||| | | || ||||||| | | | || Sbjct 6621938 TTTCCGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCT-GAGCCTTCACCACACGCTTC 6621880 Query 63153 TATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACATTG 63212 | | |||| | || ||| || || | |||||||| || ||||| | | Sbjct 6621879 ACCCGGCCTTCTTTCTCATATGAGGTGTAGAGCTTCTCGAACTCCTCCCCCCAGCACTCG 6621820 Query 63213 TCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGT 63272 |||| | || ||||| | |||||||||| ||||| || ||| || ||| | Sbjct 6621819 TCCAGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTC 6621760 Query 63273 TTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCG 63332 ||||| || || || || ||||| || || || || ||||| | || || ||||| Sbjct 6621759 TTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCC 6621700 Query 63333 TTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAG 63392 |||||||| || || || || || ||||| | | | |||| | ||||| || |||||| Sbjct 6621699 TTTCCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAG 6621640 Query 63393 TATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTA 63452 || ||||| | | |||| |||| ||||| || ||||| || | ||| | || ||||| Sbjct 6621639 TACATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTG 6621580 Query 63453 TTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAG 63512 || || ||||||| ||| || | | ||| || || | || ||||| |||| ||| ||| Sbjct 6621579 TTGTACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTAG 6621520 Query 63513 CCTCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATT 63572 | || | | || || || | || | || ||||| || ||| || ||||| Sbjct 6621519 CTCCCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATG 6621460 Query 63573 AATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGT 63632 | ||||| | || | || || || || || || ||||| || || ||||| || Sbjct 6621459 AGGGCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGC 6621400 Query 63633 AGAAAACAGCTAGACA 63648 || || ||||| |||| Sbjct 6621399 AGGAAGCAGCTGGACA 6621384 Score = 185 bits (204), Expect = 1e-41 Identities = 372/549 (68%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 63708 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63767 || || || || ||||| || ||||| |||| || ||||| || || ||||| || Sbjct 6621337 TCTGACAGCAGGTTGTAGGTTTCAATCGCTGCTTCGATATCTTTTTCGTGGATTCCGACA 6621278 Query 63768 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAG 63827 | || | ||| | ||||||||| || | || | | |||| || || ||||||| | Sbjct 6621277 GAAACCCTCATGAGCATGTGCTGTGGCCGCTCTGCCACTTTGCCATTGATCTTCAACAGG 6621218 Query 63828 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63887 || || || | ||| || || ||||| | || || || || || || ||||| || Sbjct 6621217 TAAGACCGCTCTAGAGTCTTGAAGCCAAAGAAATTATACGAGAAATCGCGGTCGTAGATT 6621158 Query 63888 ATAACCGAATTGAGCTTATCCTTATATTTGTTAACTATATCCATGGTAATACTTGAA-AT 63946 || |||| ||||| || || | | ||| || || | || | |||| | || Sbjct 6621157 ATGGCCGAGTTGAGTCGGTCTTTGTTTGCAAGAACAATGTCGAGCGTC-TCCTTGGAGAT 6621099 Query 63947 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 64006 || || || ||| |||| || || ||||||||| | | |||||||||||| || Sbjct 6621098 CATGGGGGAGTGTCGTTTATTTAAGGGGTTCACATAGTTGTACAGATCCTCCATCACCTC 6621039 Query 64007 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAAT 64066 || || | ||| || || |||||||| || ||||| | || || | || ||||| || Sbjct 6621038 GCTGAACACTTTCTTCGTCTCCTTGTGCAGGTTTGAGACAGCGATCCGTGCAGCTAGGAT 6620979 Query 64067 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 64126 ||| || || || |||| || || |||||| || || |||||||||| ||||| | Sbjct 6620978 GGCGTAGTCGGGGTGTTTGGTCGTGAGAGTGGCGGCGATCTCGGCTGCCAACGTGTCGAG 6620919 Query 64127 TTCTACCGTTGTTACTCCATTATATATTCCTTGAATAACCTTCATAGCTATTTTAATAGG 64186 || ||||| || |||||| | || | || || || |||||||| | || | || Sbjct 6620918 CTCCACCGTCGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTGATCTGGGCCGG 6620859 Query 64187 ATCTATATGATCCGTGTTTAAGCCATAGCACAATTTTCTAATACGAGACGTGATTTTATC 64246 ||| | | |||| ||| | ||| ||||||| || || ||||| |||||||| || Sbjct 6620858 ATCCACAAAGTCCGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAAGTGATTTTGTC 6620799 Query 64247 AAACATGAC 64255 |||||||| Sbjct 6620798 GAACATGAC 6620790 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 |||| || || || || ||||||||||| || | || || ||||| || || | |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq390 Length=2268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 2044 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1985 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || || || || | Sbjct 1984 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1925 Query 33724 C 33724 | Sbjct 1924 C 1924 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1639 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1580 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 1579 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1545 >seq73 Length=1910340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 1745250 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1745309 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || || || || | Sbjct 1745310 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1745369 Query 33724 C 33724 | Sbjct 1745370 C 1745370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | ||||| || || || || |||||||| ||||| | ||| | Sbjct 1749142 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1749201 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| || |||| |||||| || || || ||||||||||| || || || || || | Sbjct 1749202 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1749261 Query 33724 C 33724 | Sbjct 1749262 C 1749262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1745655 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1745714 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 1745715 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1745749 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 33852 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 33911 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1749547 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1749606 Query 33912 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 33946 ||||||||||| || ||||| || | ||||||||| Sbjct 1749607 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1749641 >seq4 Length=14220794 Score = 84.2 bits (92), Expect = 3e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 34074 ATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATG 34133 ||| |||| |||||||| ||||| || || |||| ||||| || ||||| ||||||||| Sbjct 7899842 ATACCCACCTCTTCCACCGTCCAGAAAGACGCCTGTGCCTGCTTGTACATCTTCCAGATG 7899901 Query 34134 TCATGATATTGGATTGGGAAAATAACAAA 34162 || || || ||||| ||||| || ||||| Sbjct 7899902 TCCTGGTACTGGATGGGGAAGATGACAAA 7899930 Score = 82.4 bits (90), Expect = 1e-10 Identities = 98/133 (74%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| || || || | ||||| || | || || |||||||| || || || || | Sbjct 7897544 CCTCGTCCCTGCTGATCAGCTCGTTGGAGTAGGTAAGACCGGGCATCAGTCCCCGTTTCT 7897603 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | |||||| | ||||||||||| || || || |||||||| || || || || || || | Sbjct 7897604 TGAGCCAATAGATGGAAGCGAAGGAGCCAGAGAAGAAGATGCCCTCCACCGCTGCGAATG 7897663 Query 33724 CAATAAGTCTCTC 33736 | | |||| ||| Sbjct 7897664 CCACGAGTCGCTC 7897676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629773890658560