Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2 338 8e-88 seq18 84.2 3e-11 >seq2 Length=17630497 Score = 338 bits (374), Expect = 8e-88 Identities = 876/1333 (66%), Gaps = 13/1333 (1%) Strand=Plus/Minus Query 65117 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 65176 |||||| || || || ||||| | |||||| || | || | || ||||| ||||| Sbjct 6622711 ATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGATT 6622652 Query 65177 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 65236 |||| || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 6622651 CACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTC 6622592 Query 65237 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 65296 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 6622591 AATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAG 6622532 Query 65297 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 65356 | ||| || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 6622531 CAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCACAG 6622472 Query 65357 ATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGAT 65414 | | || | | | || || || || || ||| || || Sbjct 6622471 CTTGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG 6622414 Query 65415 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 65474 ||| | ||||| ||||| || || || | || || || || || |||| | || Sbjct 6622413 CCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGCG 6622354 Query 65475 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 65534 | || || ||||| || ||||| | | || || || || || |||| || ||| Sbjct 6622353 GCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTCGAAT 6622294 Query 65535 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 65594 | | | | ||| || || | |||||| || ||||| ||||| || || || || | Sbjct 6622293 GCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCGG 6622234 Query 65595 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 65654 || | ||| || || | || || || || | || || | ||||||||||| || || Sbjct 6622233 TGACGCTTGTTGGACTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCTTG 6622174 Query 65655 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT---CGC 65711 || | |||| |||||||||||||| ||||| ||||| ||| ||||| ||| Sbjct 6622173 TTCAAATTTTTGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAAGTCCGC 6622114 Query 65712 TCATCTATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 65771 || | ||| ||||||| | ||| | || ||||||||||| ||||| ||||| | | Sbjct 6622113 TCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCTCGTCA 6622054 Query 65772 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 65831 | | || | || || || ||||| || || || | ||||||||| || | || Sbjct 6622053 CCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTC 6621994 Query 65832 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 65891 || || || ||||| |||| || | || || || || ||| |||| || |||||||| Sbjct 6621993 TGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTCC 6621934 Query 65892 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT 65950 |||| || || || || || | ||| | | || ||||||| | | | || | Sbjct 6621933 GTCTGGGACTCAATGATGGCGTGCCAAAGCTGCT-GAGCCTTCACCACACGCTTCACCCG 6621875 Query 65951 CTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 66008 |||| | || ||| ||||| | || |||||||| || ||||| | |||| Sbjct 6621874 GCCTTCTTTCTCATATGAGGTGTAGAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCC 6621817 Query 66009 AATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 66068 | || || ||||| | |||||||||| ||||| || ||| || ||| | ||| Sbjct 6621816 AGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTTC 6621757 Query 66069 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTT 66128 || || || || || ||||| || || || | ||||||| || || ||||| ||| Sbjct 6621756 ATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTT 6621697 Query 66129 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTAT 66188 ||||| || || || || || ||||| | | | |||| | ||||| || |||||||| Sbjct 6621696 CCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTAC 6621637 Query 66189 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 66248 ||||| | | |||| |||| ||||| || ||||| || | ||| | || ||||| || Sbjct 6621636 ATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTG 6621577 Query 66249 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTT 66308 || ||||||| ||| || | | ||||||||| | || ||||| |||| ||| ||||| Sbjct 6621576 TACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC 6621517 Query 66309 CCACTTGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 66368 || ||| || || || | || | || ||||| || ||| || ||||| | Sbjct 6621516 CCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATGAGG 6621457 Query 66369 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 66428 ||||| | || | ||||| || || ||||| || || || || ||||| || || Sbjct 6621456 GCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGG 6621397 Query 66429 AAACAGCTAGACA 66441 || ||||| |||| Sbjct 6621396 AAGCAGCTGGACA 6621384 Score = 172 bits (190), Expect = 7e-38 Identities = 369/549 (67%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 66501 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 66560 || || || || ||||| || ||||| |||| || ||||| || || ||||| || Sbjct 6621337 TCTGACAGCAGGTTGTAGGTTTCAATCGCTGCTTCGATATCTTTTTCGTGGATTCCGACA 6621278 Query 66561 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 66620 | || | ||| | ||||||||| || | || | | ||| || || ||||||| | Sbjct 6621277 GAAACCCTCATGAGCATGTGCTGTGGCCGCTCTGCCACTTTGCCATTGATCTTCAACAGG 6621218 Query 66621 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 66680 || || || | ||| || || ||||| | || || || || || || ||||| || Sbjct 6621217 TAAGACCGCTCTAGAGTCTTGAAGCCAAAGAAATTATACGAGAAATCGCGGTCGTAGATT 6621158 Query 66681 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAA-AT 66739 || ||||||||||| || || | | ||| | || | || | |||| | || Sbjct 6621157 ATGGCCGAGTTGAGTCGGTCTTTGTTTGCAAGAACAATGTCGAGCGTC-TCCTTGGAGAT 6621099 Query 66740 AATCGGAGAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTC 66799 || || || ||| |||| || || ||||||||| | | |||||||||||| || Sbjct 6621098 CATGGGGGAGTGTCGTTTATTTAAGGGGTTCACATAGTTGTACAGATCCTCCATCACCTC 6621039 Query 66800 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAAT 66859 || || | ||| || || || ||||| || ||||| || || || | || |||| || Sbjct 6621038 GCTGAACACTTTCTTCGTCTCCTTGTGCAGGTTTGAGACAGCGATCCGTGCAGCTAGGAT 6620979 Query 66860 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 66919 ||| || || || |||| || || |||||| || || |||||||||| ||||| | Sbjct 6620978 GGCGTAGTCGGGGTGTTTGGTCGTGAGAGTGGCGGCGATCTCGGCTGCCAACGTGTCGAG 6620919 Query 66920 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 66979 || ||||| || |||||| | || | || ||||| |||||||| | || | || Sbjct 6620918 CTCCACCGTCGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTGATCTGGGCCGG 6620859 Query 66980 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATC 67039 ||| | | || | ||| | ||| || || | || || ||||| |||||||| || Sbjct 6620858 ATCCACAAAGTCCGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAAGTGATTTTGTC 6620799 Query 67040 AAACATGAC 67048 |||||||| Sbjct 6620798 GAACATGAC 6620790 Score = 96.9 bits (106), Expect = 5e-15 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 |||| || || || || ||||||||||| || | || || ||||| || || | |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq18 Length=14161719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 66059 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATG 66118 |||||||||||| ||||| || || ||||| || || | || || ||||||| ||| || Sbjct 3646043 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTG 3646102 Query 66119 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGG 66178 ||||| || ||||| ||||| || | || | ||| | | | |||| ||||||||| Sbjct 3646103 CTCCTCTTTGCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGG 3646162 Query 66179 TTCCAAGTA 66187 |||| ||| Sbjct 3646163 CTCCAGGTA 3646171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127122807680