Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2 351 1e-91 seq390 102 1e-16 seq73 102 1e-16 seq18 91.5 2e-13 >seq2 Length=17630497 Score = 351 bits (388), Expect = 1e-91 Identities = 886/1334 (66%), Gaps = 15/1334 (1%) Strand=Plus/Minus Query 78996 ATTCTTGATCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 79055 |||||| || ||||| ||||| | |||||| || | || | || ||||| ||||| Sbjct 6622711 ATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGATT 6622652 Query 79056 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTC 79115 |||| || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 6622651 CACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTC 6622592 Query 79116 CACCGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAA 79175 | || || || || |||| || || || || || || || ||||| || |||| || Sbjct 6622591 AATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAG 6622532 Query 79176 TAAACTATTTCTAAGACCGTATGATCTGATTTTATCTTTTAG-AGATTCCCAATCCCAAA 79234 | ||| || || | |||| ||| || || || || || |||| | ||||| | Sbjct 6622531 CAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCC-AGTCCCACA 6622473 Query 79235 GATCAGACGG-GACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGAT 79293 | | | || | | | | ||| | || || || || || || || || || || Sbjct 6622472 GCTTGGTGGGCGTCTTC-TCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG 6622414 Query 79294 CCTGTGTATGTTTCATAAGGTCCTTCCTTTTCGGCTAATTCACAACTCGCCTCTAATGCT 79353 ||| |||||| || || || || || |||| | || || || |||| | || Sbjct 6622413 CCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGCG 6622354 Query 79354 CCGTAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGGCTATCAAAT 79413 | || || ||||| || || || | | || || || || || |||| || ||| Sbjct 6622353 GCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTCGAAT 6622294 Query 79414 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 79473 | | | | ||| || || | |||||| || ||||| ||||| || || || || | Sbjct 6622293 GCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCGG 6622234 Query 79474 TGTCTCTTATTAGAAATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 || | ||| || || | || || || || | || || | ||||||||||| || || Sbjct 6622233 TGACGCTTGTTGGACTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCTTG 6622174 Query 79534 TTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATCAAATCGTCCA 79593 || | ||| |||| ||||||||| ||||| |||||| ||| ||||| |||| Sbjct 6622173 TTCAAATTTTTGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAA-GTCCG 6622115 Query 79594 -TCTA---TTACAAACATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTCATT 79649 ||| | ||| ||||||| | |||| || ||||||||||| ||||| ||||| | Sbjct 6622114 CTCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCTCGTC 6622055 Query 79650 AGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATT 79709 | | | || | || ||||| ||||| ||||| || | ||| ||||| || | || Sbjct 6622054 ACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTT 6621995 Query 79710 TTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTC 79769 || || || ||||| |||| || | || || || || ||| | || || |||||||| Sbjct 6621994 CTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTC 6621935 Query 79770 AATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGACTTGTATC 79828 |||| || || || || || | ||| | | || ||||||| | | | ||| | Sbjct 6621934 CGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCT-GAGCCTTCACCACACGCTTCACCC 6621876 Query 79829 TCTTTTCTCTTTCGTAT--TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTC 79886 |||| | || ||| ||||| | || |||||||| || ||||| ||||| Sbjct 6621875 GGCCTTCTTTCTCATATGAGGTGTAGAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTC 6621818 Query 79887 TAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTT 79946 | || || ||||||| |||||||||| ||||| || | | || || | || Sbjct 6621817 CAGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTT 6621758 Query 79947 CATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTT 80006 ||| || || || || ||||| || || || || ||||||| || |||||||| || Sbjct 6621757 CATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTT 6621698 Query 80007 TCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTA 80066 |||||| || || || || || ||||| | | | |||| | ||||| || |||||||| Sbjct 6621697 TCCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTA 6621638 Query 80067 TATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATT 80126 ||||| | | |||| || | ||||| || ||||| || | ||| | || ||||| || Sbjct 6621637 CATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTT 6621578 Query 80127 ATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCT 80186 || ||||||| ||| || | | ||||||||| | || ||||| |||| ||| ||||| Sbjct 6621577 GTACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTAGCT 6621518 Query 80187 TCCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 80246 || | | || || || | || | || ||||| || ||| || ||||| | Sbjct 6621517 CCCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATGAG 6621458 Query 80247 TGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAG 80306 ||||| | || | ||||| || || ||||| ||||| || || ||||| || || Sbjct 6621457 GGCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGCAG 6621398 Query 80307 AAAACAGCTAGACA 80320 || ||||| |||| Sbjct 6621397 GAAGCAGCTGGACA 6621384 Score = 194 bits (214), Expect = 2e-44 Identities = 374/549 (68%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 80380 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACC 80439 || ||||| || ||||| || ||||| |||| ||| ||||| || || ||||| || Sbjct 6621337 TCTGACAGCAGGTTGTAGGTTTCAATCGCTGCTTCGATATCTTTTTCGTGGATTCCGACA 6621278 Query 80440 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 80499 | || | ||| | ||||||||| || | || | | ||| ||| || ||||||| | Sbjct 6621277 GAAACCCTCATGAGCATGTGCTGTGGCCGCTCTGCCACTTTGCCATTGATCTTCAACAGG 6621218 Query 80500 TAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 80559 ||||| || | ||| || || ||||| | || || || || || || ||||| || Sbjct 6621217 TAAGACCGCTCTAGAGTCTTGAAGCCAAAGAAATTATACGAGAAATCGCGGTCGTAGATT 6621158 Query 80560 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTGATACTTGAA-AT 80618 || ||||||||||| || || | | ||| | || | || | |||| | || Sbjct 6621157 ATGGCCGAGTTGAGTCGGTCTTTGTTTGCAAGAACAATGTCGAGCGTC-TCCTTGGAGAT 6621099 Query 80619 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 80678 || || || ||| |||| || || ||||||||| | | |||||||||||| || Sbjct 6621098 CATGGGGGAGTGTCGTTTATTTAAGGGGTTCACATAGTTGTACAGATCCTCCATCACCTC 6621039 Query 80679 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAAAAT 80738 || || | ||| || || |||||||| || ||||| || || || | || |||| || Sbjct 6621038 GCTGAACACTTTCTTCGTCTCCTTGTGCAGGTTTGAGACAGCGATCCGTGCAGCTAGGAT 6620979 Query 80739 GGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 80798 ||| || || || |||| || || |||||| || || |||||||||| ||||| | Sbjct 6620978 GGCGTAGTCGGGGTGTTTGGTCGTGAGAGTGGCGGCGATCTCGGCTGCCAACGTGTCGAG 6620919 Query 80799 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 80858 || ||||| || |||||| | || | || ||||| |||||||| | || | || Sbjct 6620918 CTCCACCGTCGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTGATCTGGGCCGG 6620859 Query 80859 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATC 80918 ||| | | || | ||| | ||| || || | || || ||||| |||||||| || Sbjct 6620858 ATCCACAAAGTCCGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAAGTGATTTTGTC 6620799 Query 80919 AAACATGAC 80927 |||||||| Sbjct 6620798 GAACATGAC 6620790 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 78785 TCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 78844 |||| |||||||| ||||| || || |||||| ||| | || || || || || || | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 78845 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 78904 |||| || || || || ||||||||||| || | || || ||||| || || | |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 78905 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 78955 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq390 Length=2268 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 2044 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1985 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || ||||| || | Sbjct 1984 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1925 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 1924 CCACCACGCGCTCTCC 1909 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1639 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1580 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || ||||| || | ||||||||| Sbjct 1579 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1545 >seq73 Length=1910340 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 1745250 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1745309 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || ||||| || | Sbjct 1745310 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1745369 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 1745370 CCACCACGCGCTCTCC 1745385 Score = 102 bits (112), Expect = 1e-16 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || |||||||| || || || |||||||| ||||| | ||| | Sbjct 1749142 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1749201 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| || |||| || || || ||||| ||||||||||| || || ||||| || | Sbjct 1749202 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1749261 Query 50102 CAACAAGTCTCTCTCC 50117 | || | | |||||| Sbjct 1749262 CCACCACGCGCTCTCC 1749277 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1745655 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1745714 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || ||||| || | ||||||||| Sbjct 1745715 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1745749 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 50230 TAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAAT 50289 || || ||||||| || || ||||| ||||| || ||||| || ||||| ||||| || Sbjct 1749547 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1749606 Query 50290 CCGTAGAAACATCTAGCCTCGGTAATCTGCACTTC 50324 ||||||||||| || ||||| || | ||||||||| Sbjct 1749607 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1749641 >seq18 Length=14161719 Score = 91.5 bits (100), Expect = 2e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 || || ||||| || | ||||| || || ||||| ||||| || || ||||| | ||| Sbjct 3647348 GTGCCGGCATTGAACAGAGTAGGTGAGGCATGCGTGAACCACTTCTCTGACAGCAAGTTG 3647407 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 || ||||| || |||| || || || || ||| ||||||||||| || | ||||| | Sbjct 3647408 TATGTCTCGATGGCTGCGTCAATGTCTTCTTTATGGATTCCTACCGCCACCCTCATTAGC 3647467 Query 80455 ATGTGCTGAGGTCTTTCA 80472 |||||||| || || ||| Sbjct 3647468 ATGTGCTGGGGCCTCTCA 3647485 Score = 87.8 bits (96), Expect = 3e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 79939 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 79998 ||||||||||| ||||| || || ||||| || || | || | ||||||| ||| ||| Sbjct 3646044 ACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTGC 3646103 Query 79999 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 80058 ||||| || ||||| ||||| || | || | ||| | | | ||||| ||||||||| Sbjct 3646104 TCCTCTTTGCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGGC 3646163 Query 80059 TCCAAGTA 80066 |||| ||| Sbjct 3646164 TCCAGGTA 3646171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718218952145280