Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2 333 4e-86 seq390 87.8 2e-12 seq73 87.8 2e-12 seq18 87.8 2e-12 >seq2 Length=17630497 Score = 333 bits (368), Expect = 4e-86 Identities = 898/1366 (66%), Gaps = 19/1366 (1%) Strand=Plus/Minus Query 71049 CTGAATGGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCT 71108 ||||||||| || | ||||| | | ||| || || ||||| ||||| | ||| Sbjct 6622741 CTGAATGGAGCCCGTGTGAGCAATCAGCTGATTCTTCATATCTTCGTTCCACAGCCCTCT 6622682 Query 71109 CTCGGTTAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCT 71168 ||| || | || | || ||||| ||||| |||| || || ||||| || | || || Sbjct 6622681 CTCCGTCAGGTCTTTGAGCAGATGGGGATTCACTATCTGGAACTCTCCGGAGAGGACCCT 6622622 Query 71169 ACGAGTGTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGC 71228 || ||||| || || ||||| || | ||| | ||||| || || |||| || || || Sbjct 6622621 GCGGGTGTAGATGTTGCTGGTGTAGGCTTCAATGGACTCGTTGTTGCCCAGGATCTGGGC 6622562 Query 71229 AGTTGATGCAGTCGGCATAGGTGCCACCAATAGACTATTTCTAAGACCATGTGATCGG-- 71286 || || || || ||||| || |||| || ||||| || || | || ||| | || Sbjct 6622561 GGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACCCC--GTGCTTGGCG 6622504 Query 71287 ATTTTATCTTTTAG-AGATTCCCAATTCCAAAGATCCGATGGTACAACNNNNNNNNNNNN 71345 || || || || || || |||| | | ||| || | | || Sbjct 6622503 ATCTTTTCCTTGAGCAGCTTCC-AGTCCCACAGCTTGGTGGGCGTCTTCTCCCACATGTC 6622445 Query 71346 NNNNNNNNNNATGCCGTTACTAGCGTATGATCCTGCATATGTATCGTATGGTCCTTCTTT 71405 ||||| || || || || ||| | ||||| ||||| || || | Sbjct 6622444 GTACTGGAGGATGCCCTTGCTGACGGGGGAGCCTTCGTATGTCTCGTAGGGGCCGAGCTC 6622385 Query 71406 TTCGGCTAGTTCACAACTCGCCTCTAATGCTCCATAATAAATGGTTTCGAAAATCTTCTT 71465 |||| || || || || |||| | || |||| || ||||| || || || | | Sbjct 6622384 GGCGGCCAGCTCGCAGCTGCCCTCCAGGGCGGCATAGTAGATGGTCTCAAAGATTTGAAT 6622325 Query 71466 ATTGAGATCTTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGC 71525 || || || || || ||||| || |||| | | | ||| || || | |||||| Sbjct 6622324 GTTCAGCAGCTGCGCCTCAGGGCTTTCGAATGCGTGACGCATGAGGATGAAGGTGTCTGC 6622265 Query 71526 TAATCCTTGAACGCCAATACCGATAGGTCTGTGTCTCTTATTAGAAATTTCAGCTTCTGG 71585 || ||||| || || || || || || | ||| | ||| || || | || || || || Sbjct 6622264 CAAACCTTGGACACCGATTCCTATTGGCCGGTGACGCTTGTTGGACTTCTCTGCCTCAGG 6622205 Query 71586 AATAGGATAATAATTAATATCTATAATTTTATTGAGATTTCTGACTATTACTTTGACCAC 71645 | || || | ||||||||||| || || || | |||| |||| ||||||||| ||| Sbjct 6622204 CACTGGGTAGAAGTTAATATCTATGATCTTGTTCAAATTTTTGACAATTACTTTGGTCAC 6622145 Query 71646 ATCCTTTAGTTTGAGAAAATCAAATCTCCCATCT---ATTACAAACACGTTCAAGGCAAC 71702 || |||||| ||| ||||| ||| ||| | ||| ||| ||| | || | Sbjct 6622144 ATAAGCTAGTTTTTTAAAGTCAAAAGTCCGCTCTGGGGTGACATACATGTTGAGTGCGAT 6622085 Query 71703 AGATGCCAGATTACAAACGGCTACCTCATTAGCATCGGCATATTGTATAATTTCAGTGCA 71762 || ||||||||||| ||||| ||||| | | | || || | || ||||| ||||| Sbjct 6622084 TGAGGCCAGATTACAGACGGCGACCTCGTCACCGCTGGTGTACTCAATGATTTCTGTGCA 6622025 Query 71763 AAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATC 71822 || || || | ||||||||| || | || || || || ||||| |||| || | || Sbjct 6622024 CAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGATGGTTGCTCTTCCTGTTGCAGGAGTC 6621965 Query 71823 CTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGA- 71881 || || || || | || || |||||||| |||| || || || || || | ||| | Sbjct 6621964 TTTGTAGAGCATGTATGGCGTGCCAGTTTCCGTCTGGGACTCAATGATGGCGTGCCAAAG 6621905 Query 71882 CGACTCGAGCCTTTATTATATTCTTGTATCTCTTTTCTCTTTCGTAT--TGTGTATATAA 71939 | || ||||||| | | | ||| | |||| | || ||| ||||| | Sbjct 6621904 CTGCT-GAGCCTTCACCACACGCTTCACCCGGCCTTCTTTCTCATATGAGGTGTAGAGCT 6621846 Query 71940 TCGTTCGAACTCGTCTCCCCAAGCA-TTGTCTAATCCAGGACATTCATTCGGACACATCA 71998 || |||||||| || |||| |||| | ||| | || || ||||| || |||||||||| Sbjct 6621845 TC--TCGAACTCCTC-CCCCCAGCACTCGTCCAGCCCGGGGCATTCGTTTGGACACATCA 6621789 Query 71999 ATGACCACT-CTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCT 72057 ||||| | ||| | || | || | ||||| || || || || ||||| || || Sbjct 6621788 GAGACCAGTCCTCGTTGGTC-TCCACCCTCTTCATGAACAGGTCGGGGATCCACAGGGCG 6621730 Query 72058 ATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAAC 72117 || || ||||||| || |||||||| |||||||| || || || || || ||||| Sbjct 6621729 TAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTTTTCTTCAGCTCCAGGAAG 6621670 Query 72118 GCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTT 72177 | | | |||| | ||||| || |||||||| ||||| | | |||| |||| ||||| Sbjct 6621669 TCAAACACATCAAAGTGCCAGGGCTCCAAGTACATGGCGAAAGCTCCGGGCCTCTTGTTG 6621610 Query 72178 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 72237 || ||||| || | ||| | || ||||| || || ||||||| ||| || | | |||| Sbjct 6621609 CCGCCCTGGTCGACGTACCGCGCCGTGTTGTTGTACACTCTCAGCATGGGGACTAGACCA 6621550 Query 72238 TTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGAT 72297 ||||| || ||||| |||| ||| ||||| || | | || || ||| | || Sbjct 6621549 TTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTCCCTGTTGATCGGATGCAGCTGACTGCC 6621490 Query 72298 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 72357 | || ||||| || ||| || ||||| | ||||| | || | ||||| || || Sbjct 6621489 ACGCCGATTCCTCCGGCCGACTTGGAGATGAGGGCGCACTGCTTCAGTGTATCGTAAATC 6621430 Query 72358 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACA 72403 ||||| || || || || ||||| || || || ||||| |||| Sbjct 6621429 CCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGACA 6621384 Score = 185 bits (204), Expect = 1e-41 Identities = 382/566 (67%), Gaps = 2/566 (0%) Strand=Plus/Minus Query 72463 TCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACC 72522 || ||||| || ||||| || ||||| |||| ||| ||||| || || ||||| || Sbjct 6621337 TCTGACAGCAGGTTGTAGGTTTCAATCGCTGCTTCGATATCTTTTTCGTGGATTCCGACA 6621278 Query 72523 GCGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAG 72582 | || | ||| | ||| ||||| || | || | | ||| ||| || ||||||| | Sbjct 6621277 GAAACCCTCATGAGCATGTGCTGTGGCCGCTCTGCCACTTTGCCATTGATCTTCAACAGG 6621218 Query 72583 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 72642 || || || | ||| || || ||||| | || || || || || || ||||| || Sbjct 6621217 TAAGACCGCTCTAGAGTCTTGAAGCCAAAGAAATTATACGAGAAATCGCGGTCGTAGATT 6621158 Query 72643 ATAACCGAATTGAGTTTATCCTTATATTTGTTAACTATATCCATGGTGATACTTGAA-AT 72701 || |||| |||||| || || | | ||| || || | || | |||| | || Sbjct 6621157 ATGGCCGAGTTGAGTCGGTCTTTGTTTGCAAGAACAATGTCGAGCGTC-TCCTTGGAGAT 6621099 Query 72702 AATCGGAGAATGTTTCCCATTTTTAGGATTAACATAGTTGAATAAATCCTCCATCACTTC 72761 || || || ||| |||| || || ||||||||| | | |||||||||||| || Sbjct 6621098 CATGGGGGAGTGTCGTTTATTTAAGGGGTTCACATAGTTGTACAGATCCTCCATCACCTC 6621039 Query 72762 ACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATACGGCTATTCTGGCGGCTAGAAT 72821 || || | ||| || || |||||||| || ||||| || || || | || ||||| || Sbjct 6621038 GCTGAACACTTTCTTCGTCTCCTTGTGCAGGTTTGAGACAGCGATCCGTGCAGCTAGGAT 6620979 Query 72822 GGCATAATCTGGATGTTGTGTAGTACAAGTGGCTGCTATTTCTGCTGCCAGAGTGTCCAA 72881 ||| || || || |||| || || |||||| || || || ||||||| ||||| | Sbjct 6620978 GGCGTAGTCGGGGTGTTTGGTCGTGAGAGTGGCGGCGATCTCGGCTGCCAACGTGTCGAG 6620919 Query 72882 TTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 72941 || ||||| || |||||| | || | || ||||| |||||||| | || | || Sbjct 6620918 CTCCACCGTCGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTGATCTGGGCCGG 6620859 Query 72942 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGACGTGATTTTATC 73001 ||| | | || | ||| | ||| || || | || || ||||| |||||||| || Sbjct 6620858 ATCCACAAAGTCCGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAAGTGATTTTGTC 6620799 Query 73002 AAACATAACATTTTCCCGGCATCCAT 73027 ||||| || ||| ||| ||||| Sbjct 6620798 GAACATGACGCGCTCCTGGCGTCCAT 6620773 Score = 120 bits (132), Expect = 4e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||| || || |||||| |||| | || ||||| |||||||| | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 |||| ||||| || || ||||||||||| || | || || ||||| || || | |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq390 Length=2268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 2044 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1985 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || || | Sbjct 1984 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1925 Query 42207 C 42207 | Sbjct 1924 C 1924 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| || || || ||||| || ||||| ||||| || Sbjct 1639 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1580 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| |||||||| || ||||| ||||| Sbjct 1579 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1545 >seq73 Length=1910340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 1745250 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1745309 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || || | Sbjct 1745310 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1745369 Query 42207 C 42207 | Sbjct 1745370 C 1745370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | |||||||| || || || |||||||| ||||| | ||| | Sbjct 1749142 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1749201 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| || || | || || || ||||| ||||||||||| || || || || || | Sbjct 1749202 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1749261 Query 42207 C 42207 | Sbjct 1749262 C 1749262 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| || || || ||||| || ||||| ||||| || Sbjct 1745655 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1745714 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| |||||||| || ||||| ||||| Sbjct 1745715 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1745749 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 42335 TATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAAT 42394 || || ||||||| || || ||||| || || || ||||| || ||||| ||||| || Sbjct 1749547 TAGGTGTCGATCAGGAGGCTGTACATCTCCGAGTGGATGTTCTCCATGGCGATCTGGAAC 1749606 Query 42395 CCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 ||||||||||| |||||||| || ||||| ||||| Sbjct 1749607 CCGTAGAAACACCTGGCCTCCGTCACCTGCACTTC 1749641 >seq18 Length=14161719 Score = 87.8 bits (96), Expect = 2e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||||||||| ||||| || || ||||| || || | || | ||||||| ||| ||| Sbjct 3646044 ACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTGC 3646103 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 ||||| || ||||| ||||| || | || | ||| | | | ||||| ||||||||| Sbjct 3646104 TCCTCTTTGCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGGC 3646163 Query 72142 TCCAAGTA 72149 |||| ||| Sbjct 3646164 TCCAGGTA 3646171 Score = 87.8 bits (96), Expect = 2e-12 Identities = 102/138 (74%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 72418 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 72477 || || ||||| || | ||||| || || ||||| ||||| || || ||||| | ||| Sbjct 3647348 GTGCCGGCATTGAACAGAGTAGGTGAGGCATGCGTGAACCACTTCTCTGACAGCAAGTTG 3647407 Query 72478 TACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAAC 72537 || ||||| || |||| || || || || ||| ||||||||||| || | ||||| | Sbjct 3647408 TATGTCTCGATGGCTGCGTCAATGTCTTCTTTATGGATTCCTACCGCCACCCTCATTAGC 3647467 Query 72538 ATATGCTGAGGTCTTTCA 72555 || ||||| || || ||| Sbjct 3647468 ATGTGCTGGGGCCTCTCA 3647485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671092622939520