Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq2 176 7e-39 seq390 93.3 6e-14 seq73 93.3 6e-14 seq4 91.5 2e-13 >seq2 Length=17630497 Score = 176 bits (194), Expect = 7e-39 Identities = 357/528 (68%), Gaps = 24/528 (5%) Strand=Plus/Plus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGA 96866 || ||||||||| ||| ||| ||||| || ||||| ||| ||||||| | | | || Sbjct 6621533 ACCAACGGCAACTCCAATGGTCTAGTCCCCATGCTGAGAGTGTACAACAACACGGCGCGG 6621592 Query 96867 TACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGG 96926 ||||| ||||||||||| || |||| || ||| | ||| | |||||||| || ||| Sbjct 6621593 TACGTCGACCAGGGCGGCAACAAGAGGCCCGGAGCTTTCGCCATGTACTTGGAGCCCTGG 6621652 Query 96927 CACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGA 96986 ||| || || |||||||| | ||| || |||||| | || || ||| | Sbjct 6621653 CACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAAAACACAGGAAAGGAGGAGCAGAGG 6621712 Query 96987 GCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT------C 97040 ||||| ||| | || || || || ||| | || || ||||||||||| | || | Sbjct 6621713 GCCAGAGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAAGAGGGTGGAGACC 6621772 Query 97041 AACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGC 97100 ||||| | ||||| || ||||| || || | ||||| ||| ||| ||| Sbjct 6621773 AACGAGG------ACTGGTCTCTGATGTGTCCAAACGAATGCCCCGGGCTGGACGAGTGC 6621826 Query 97101 TGGGGCGAAGAGTTTGAGGCCAAG---TACACGGCCTACGAGCAAGAGGGCCGATACGTG 97157 ||||| || ||||| ||| ||| ||||| | || ||| |||| ||||| ||| Sbjct 6621827 TGGGGGGAGGAGTTCGAG---AAGCTCTACACCTCATATGAGAAAGAAGGCCG---GGTG 6621880 Query 97158 AGACGAGTCG---ATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACT 97214 | || || | | || | | || ||| | |||||| | | | ||| || ||| Sbjct 6621881 AAGCGTGTGGTGAAGGCTCAGCAGCTTTGGCACGCCATCATTGAGTCCCAGACGGAAACT 6621940 Query 97215 GGAACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTG 97274 || || || ||||| |||||||| || || || | || |||||||| | || || Sbjct 6621941 GGCACGCCATACATGCTCTACAAAGACTCCTGCAACAGGAAGAGCAACCATCAGAACCTG 6622000 Query 97275 GGCACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCC 97322 |||||||||||| || ||| |||||||| ||||| | |||||| || Sbjct 6622001 GGCACCATCAAGAGCAGCAACCTGTGCACAGAAATCATTGAGTACACC 6622048 >seq390 Length=2268 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || ||| || || |||||||| | Sbjct 1919 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1978 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 1979 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 2012 >seq73 Length=1910340 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || ||| || || |||||||| | Sbjct 1745375 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1745316 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 1745315 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 1745282 Score = 93.3 bits (102), Expect = 6e-14 Identities = 77/94 (82%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 125428 TGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTT 125487 ||||||| ||||||||||| ||||| |||||||| || ||| || || |||||||| | Sbjct 1749267 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1749208 Query 125488 GGCTCAAGAAGCGCGGACTCATGCCCGGACTGAC 125521 |||| |||||| | || || |||||||| ||||| Sbjct 1749207 GGCTGAAGAAGAGAGGCCTGATGCCCGGCCTGAC 1749174 >seq4 Length=14220794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 125425 GACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCT 125484 |||| ||||||||||| || || |||||||||||||| || || || || |||||| Sbjct 7897672 GACTCGTGGCATTCGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCCTTCGCTTCCATCT 7897613 Query 125485 TTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAG 125534 |||||||||||| || ||||| |||||||| || || || |||||| Sbjct 7897612 ATTGGCTCAAGAAACGGGGACTGATGCCCGGTCTTACCTACTCCAACGAG 7897563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741007770491520