Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 176 1e-38 seq33 172 1e-37 seq37 109 1e-18 >seq3 Length=24902066 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || |||||||| Sbjct 14701520 ATGCCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701579 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || || ||||| ||||| |||||||| || |||||||| ||||||||| Sbjct 14701580 GAGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 14701639 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | ||| ||||| || || || || || | || Sbjct 14701640 GGGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701699 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| || || || ||||| |||||||| Sbjct 14701700 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701749 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || |||||||| Sbjct 14701748 ATGCCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701807 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || || ||||| ||||| |||||||| || |||||||| ||||||||| Sbjct 14701808 GAGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 14701867 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | ||| ||||| || || || || || | || Sbjct 14701868 GGGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701927 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| || || || ||||| |||||||| Sbjct 14701928 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701977 Score = 176 bits (194), Expect = 1e-38 Identities = 177/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || |||||||| Sbjct 14701976 ATGCCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14702035 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || || ||||| ||||| |||||||| || |||||||| ||||||||| Sbjct 14702036 GAGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 14702095 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || |||||||| || || || |||| || Sbjct 14702096 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCA 14702155 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| || ||||| Sbjct 14702156 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 14702205 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || || |||||| Sbjct 14701292 ATGCCTCCTCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 14701351 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| || ||||| || || || |||||||| || |||||||| || ||||| Sbjct 14701352 GAGAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGT 14701411 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| | ||| ||||| || || || || || | || Sbjct 14701412 GGAATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701471 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || || ||||| ||||| || || || ||||| |||||||| Sbjct 14701472 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701521 Score = 163 bits (180), Expect = 7e-35 Identities = 174/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || |||||||| Sbjct 14701064 ATGCCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701123 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| || || || || || |||||||| || || ||||| || |||||| Sbjct 14701124 GAGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGA 14701183 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || ||||| || | ||| || || | || Sbjct 14701184 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCA 14701243 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| ||||| ||||| || || || || || ||||| |||||||| Sbjct 14701244 ACCTCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 14701293 >seq33 Length=5647056 Score = 172 bits (190), Expect = 1e-37 Identities = 176/230 (77%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || ||||||||| Sbjct 12024 ATGCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCA 11965 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | ||| ||||| || || || |||||||| || |||||||| |||||||| Sbjct 11964 GAGAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGC 11905 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || ||||| || | ||| ||||| ||||| Sbjct 11904 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCA 11845 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || || || |||||||| Sbjct 11844 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 11795 Score = 163 bits (180), Expect = 7e-35 Identities = 180/239 (75%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 104323 TTTATTTATT--CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATA 104380 || ||||||| || || || || | || || ||||| | || ||||| ||||| || Sbjct 12261 TTCATTTATTGACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATG 12202 Query 104381 TTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGT 104440 ||||||||||| || || | || ||||| | || || |||||||| || |||||||| Sbjct 12201 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGC 12142 Query 104441 TGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCG 104500 |||||||| || || || || || ||||||||||| || || ||||| || | ||| || Sbjct 12141 TGATCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCA 12082 Query 104501 CTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 12081 CTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 12023 Score = 158 bits (174), Expect = 3e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || || |||||| Sbjct 6214 ATACCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 6155 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || |||||||| || ||||| Sbjct 6154 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGG 6095 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || |||||||| | ||| || || || || Sbjct 6094 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCA 6035 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 6034 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 5985 Score = 154 bits (170), Expect = 3e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || ||||| | || ||||||||||| || || |||||| Sbjct 6670 ATACCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 6611 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || ||||| || || ||||| Sbjct 6610 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGG 6551 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || ||||| ||||| || || || ||||| | ||| || || || || Sbjct 6550 GGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCA 6491 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 6490 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6441 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || || || | || || ||||| | || ||||||||||| || || |||||| Sbjct 6442 ATACCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 6383 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || ||||| || || || || ||||| || ||||| || || ||||| Sbjct 6382 GAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGG 6323 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||| ||||| || || || ||||| | ||| || || || || Sbjct 6322 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCA 6263 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| ||||| || || || ||||| |||||||| Sbjct 6262 ACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6213 >seq37 Length=6129110 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | || || || || | || || || |||||||| ||||||||| Sbjct 1723266 ATACCTCCTCTCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCA 1723207 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | || || || ||||| || || ||||| || || | ||| || |||| Sbjct 1723206 GAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGAG 1723147 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| ||||||| |||| || || ||||| || | || | | || || Sbjct 1723146 GGGATGCCTTCCTTATCCTTGATCTGGGCCTTCACATTCTCAATGGCGCAGTTTGGCTCC 1723087 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || | || || ||||| ||||| || || || || || |||||||| Sbjct 1723086 ACTTCCAAGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 1723037 Score = 87.8 bits (96), Expect = 4e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 104402 CCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCT 104461 || ||||| || | | |||||||| || || | | ||||||||||| || ||||| Sbjct 1723422 CCATCTTCGAGCTACTCACCAGCAAAGATCAGACGTTACTGATCAGGAGGGATGCCTTCC 1723363 Query 104462 TTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTA 104521 ||||| | ||||| || | | |||||| | ||| || || | || || || || ||| Sbjct 1723362 TTATCTTTGATCTTGGCCTCCAAATTTTCAATGGTGTCACTTGCCTCCACTTCAAGGGTA 1723303 Query 104522 ATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || ||||| | ||| || || || ||||| |||||||| Sbjct 1723302 ATGGTCTTGCTAGTCAGGGTCTTCACAAAGATCTGCAT 1723265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151316495274816