Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq3 114 1e-20 seq33 102 7e-17 >seq3 Length=24902066 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || || || |||| ||||| || | || | || ||||| ||||| | | Sbjct 14702539 AAAATTTGCATGCCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATG 14702598 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| | ||| || ||||| |||||| ||||||| | || ||| Sbjct 14702599 TTGTAATCAGAGAGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGC 14702658 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || |||||||| ||||||||||| | || || ||||| || | | | |||||| Sbjct 14702659 TGGTCAGGAGGAATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCA 14702718 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATG 95008 | || || |||| || |||||||| || || || || || || |||||||||||| Sbjct 14702719 CTGGCCTCAACCTCAAGGGTAATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCATG 14702778 Query 95009 C 95009 | Sbjct 14702779 C 14702779 Score = 113 bits (124), Expect = 4e-20 Identities = 121/160 (76%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || ||||| || ||| ||||||| | || ||||| || || ||||| |||||||| Sbjct 14702850 ATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCTTT 14702909 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | | |||||| | | || || |||| ||||| Sbjct 14702910 GTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACCTCAAGGGTGAT 14702969 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGCTT 95011 |||||| ||||| || ||||| ||||||||||||||| || Sbjct 14702970 GGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATGGTT 14703009 Score = 109 bits (120), Expect = 5e-19 Identities = 164/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 |||||||| | |||| |||| || | || ||||| || || | |||||| ||| Sbjct 14701067 CCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGG-- 14701124 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || || || |||||||||||| || || ||||||| | ||| ||||| || |||| Sbjct 14701125 AGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAG 14701184 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 |||| ||||| ||||| | || || ||||| || | | | |||||| | || | Sbjct 14701185 GAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAA 14701244 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | || ||||| || || || || || || |||||||||||||||| Sbjct 14701245 CCTCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATGC 14701295 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| || | || ||||| || || | |||||| ||| Sbjct 14701523 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGG-- 14701580 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | |||||| |||||||| || ||||||| | || |||||||| |||| Sbjct 14701581 AGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 14701640 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || || | || || | ||||||||| | || | Sbjct 14701641 GGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAA 14701700 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || ||||| || || || |||||||||||||||| Sbjct 14701701 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGC 14701751 Score = 105 bits (116), Expect = 6e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || || |||| |||| |||| || | || ||||| || || | |||||| ||| Sbjct 14701751 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGG-- 14701808 Query 94841 ATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAG 94898 | || ||| | |||||| |||||||| || ||||||| | || |||||||| |||| Sbjct 14701809 AGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAG 14701868 Query 94899 GAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGA 94958 | || ||||| ||||| | || || | || || | ||||||||| | || | Sbjct 14701869 GGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAA 14701928 Query 94959 CGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 | || | |||||||| || ||||| || || || |||||||||||||||| Sbjct 14701929 CCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGC 14701979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || ||||| || || ||||| ||||| || Sbjct 14701366 ATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGAATGCCTTCCTT 14701425 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || | || || | ||||||||| | || || || | ||||| Sbjct 14701426 GTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACCTCTAGGGTGAT 14701485 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || || |||||||||||||||| Sbjct 14701486 GGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGC 14701523 >seq33 Length=5647056 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || | ||| | ||| |||||||| || ||| Sbjct 11763 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 11704 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || ||||| || || || |||||||| ||||| | || || ||||| Sbjct 11703 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCTTCCTTGTCCTGGATCTTGGCCTTC 11644 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || |||| |||||||| || ||||| || || Sbjct 11643 ACATTTTCAATGGTGTCACTGGGCTCAACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 11584 Query 94991 TTCACAAAGATCTGCATGCTTACA 95014 || ||||||||||||||| || || Sbjct 11583 TTGACAAAGATCTGCATGGTTGCA 11560 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | || | || ||||| || || | ||| || || Sbjct 6667 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6608 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | |||||||| || || || Sbjct 6607 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGG 6548 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || ||||| ||||| | || || ||||| ||| | | |||||| | | || || Sbjct 6547 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACC 6488 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || || |||||||||||||| Sbjct 6487 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6441 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || | ||| | ||| |||||||| || ||| Sbjct 6865 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCG 6806 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | |||||||| || || || || ||||| ||||| | || || ||||| Sbjct 6805 GCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTC 6746 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||||| | | || || || | |||||||| || ||||| || || Sbjct 6745 ACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 6686 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 6685 TTGACAAAGATCTGCAT 6669 Score = 98.7 bits (108), Expect = 9e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | ||| || || | ||| | ||| ||||||||||| ||| Sbjct 8237 GTGGATTCCTTCTGGATGTTGTAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGTTTGCCG 8178 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | |||||||| || || || || || || ||||| | || || ||||| Sbjct 8177 GCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 8118 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 ||| | | |||||| | | || || || | |||||||| || ||||| || || Sbjct 8117 ACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 8058 Query 94991 TTCACAAAGATCTGCAT 95007 || |||||||||||||| Sbjct 8057 TTGACAAAGATCTGCAT 8041 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || ||| ||||||| | |||||||| || || || || || || || Sbjct 6368 ATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGGATGCCCTCCTT 6309 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| ||| | | |||||| | | || || || | ||||| Sbjct 6308 GTCCTGGATCTTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAACCTCCAGGGTGAT 6249 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || || || |||||||||||||| Sbjct 6248 GGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6213 Score = 93.3 bits (102), Expect = 4e-14 Identities = 140/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || |||||||| || | |||||| || | ||| | ||| |||| ||| || || Sbjct 12219 GTGGATTCCTTCTGGATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAACTGCTTGCCA 12160 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | || |||||||| || || || || || ||||| | ||| || ||||| Sbjct 12159 GCAAAGATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTTGTCCTGAATCTTGGCCTTC 12100 Query 94931 ACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTT 94990 || | | |||||| | | || || || | |||||||| || ||||| || || Sbjct 12099 ACATTCTCAATGGTGTCACTGGGCTCAACCTCCAGAGTGATGGTCTTGCCAGTCAGGGTC 12040 Query 94991 TTCACAAAGATCTGCATGC 95009 || |||||||||||||||| Sbjct 12039 TTAACAAAGATCTGCATGC 12021 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||||| |||| || | || | || ||||| || || | ||| || || Sbjct 6211 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6152 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || || Sbjct 6151 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 6092 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || || ||||| | || || ||||| || | | |||||| | | || || Sbjct 6091 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 6032 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || ||||| || || || |||||||||||||| Sbjct 6031 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 5985 Score = 82.4 bits (90), Expect = 7e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| |||||||| || || ||||||| | || |||||||| || || || || || || Sbjct 11950 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGGATGCCCTCCTT 11891 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || | | ||||| | | || || || | ||||| Sbjct 11890 GTCCTGGATCTTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCAACCTCCAGGGTGAT 11831 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||| || ||||| || || ||||| ||||||||||||| Sbjct 11830 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATGC 11793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448260088590720