Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq55 127 1e-24 seq10 127 1e-24 seq59 125 5e-24 seq25 102 5e-17 seq3 96.9 2e-15 seq37 95.1 8e-15 seq28 95.1 8e-15 seq22 95.1 8e-15 >seq55 Length=4898074 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| ||||| || |||||||| Sbjct 4897772 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGT 4897831 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 4897832 TCATCCATTCATGCCCGTCACTAATTAGATGACGA 4897866 >seq10 Length=24626513 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||| | ||| || |||||||| Sbjct 3192677 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGGTGGGGACAGTGGGAATCTCGT 3192736 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 3192737 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 3192771 >seq59 Length=2817345 Score = 125 bits (138), Expect = 5e-24 Identities = 131/172 (76%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 6319 ACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACG 6378 ||||||| || | ||| || || ||||||||||||||||| ||||||||| |||||| | Sbjct 40380 ACCCGACCAAGTTTTTTGGTTGTGAACTTGGCGCTCAGACCCAGTTTGATACCAAAAATG 40439 Query 6379 AGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCT 6438 | || | |||||| |||||||| || | | |||| |||||||| | ||||| || | Sbjct 40440 ACCGTTACATCGTCAACGGATCCCACGAGGCGAACAAGTTGCAGGACATGCTTGATGGGT 40499 Query 6439 TTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 | || | || ||||||||||||| || || || ||||| || || || || Sbjct 40500 TCATCAGAAAATTTGTGCTGTGTCCCGAGTGTGACAACCCTGAAACTGATCT 40551 >seq25 Length=12193906 Score = 102 bits (112), Expect = 5e-17 Identities = 76/89 (85%), Gaps = 5/89 (6%) Strand=Plus/Minus Query 25908 GTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCC 25962 ||||||||||||||| |||||||||||||||| ||||| || ||||||||| |||| Sbjct 10899919 GTTCCCTTGGCTGTGCTTTCGCTAGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCC 10899860 Query 25963 TTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||||| |||||| |||| ||||||| Sbjct 10899859 ATTCATGCGTGTCACTGATTACATGACGA 10899831 >seq3 Length=24902066 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| |||||| || | |||||| ||| || ||||| || ||||||||||| Sbjct 14702551 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702610 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || || | || || || | || Sbjct 14702611 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 14702670 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||||||||| | | || || | ||||| Sbjct 14702671 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACC 14702730 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | ||||| ||||| || || | ||| || ||||| ||||||||| Sbjct 14702731 TCAAGGGTAATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCATG 14702778 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| |||||| || | |||||| ||| || ||||| || ||||||||||| Sbjct 14702323 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702382 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || ||||||||||| || || | || || || | ||| Sbjct 14702383 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702442 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| |||||| || || |||||| |||| ||||| || | || || Sbjct 14702443 ATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTCTCCACAGTGTCGCTGGGCTCTACC 14702502 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || || || | ||| || ||||| || |||||| Sbjct 14702503 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATTTGCATG 14702550 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 || || |||| ||||| || | ||| || ||| ||| || || || ||||| ||||| Sbjct 14702779 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 14702838 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || | || || | || || |||||||| || || | || || || | ||| Sbjct 14702839 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702898 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||||||||||||| || || ||||||||| | | || || | |||||| Sbjct 14702899 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACC 14702958 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTT 38321 || | || || ||||| || || | |||||| || || ||||||||| || Sbjct 14702959 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATGGTT 14703009 >seq37 Length=6129110 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||| ||||||| |||| ||| | ||||| ||| |||||| ||||| || || |||| Sbjct 1723265 TACCTCCTCTCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCAG 1723206 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 | | || | || || | ||| || |||||||| || || || || || || |||| Sbjct 1723205 AGAGGGTGCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGAGG 1723146 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---T 38265 ||| |||||| || ||| | || | ||||||||||| || | | | || | Sbjct 1723145 GGATGCCTTCCTTATCCTTGATCTGGGCCTTCACATTCT---CAATGGCGCAGTTTGGCT 1723089 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | ||||| || || || || || || || | ||| || ||||| |||||||| Sbjct 1723088 CCACTTCCAAGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 1723037 >seq28 Length=8474801 Score = 95.1 bits (104), Expect = 8e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 19952 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGTAA 20011 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | Sbjct 3277982 TCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTCGACTATCGGTCTCGTGCCGG 3277923 Query 20012 TATTTAGCCTTA 20023 |||||||||||| Sbjct 3277922 TATTTAGCCTTA 3277911 >seq22 Length=5544135 Score = 95.1 bits (104), Expect = 8e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||||||||||||| ||||||||||||||| ||||||||||| |||||||||||| | Sbjct 5527928 CTCTCTTCAAAGTTATTTTCAACTTTCCCTTACGGTACTTGTCGACTATCGGTCTCGTGC 5527869 Query 20009 TAATATTTAGCCTTA 20023 | |||||||||||| Sbjct 5527868 TGGTATTTAGCCTTA 5527854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334924535797712