Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2 342 6e-89 seq18 84.2 3e-11 >seq2 Length=17630497 Score = 342 bits (378), Expect = 6e-89 Identities = 877/1333 (66%), Gaps = 13/1333 (1%) Strand=Plus/Minus Query 62128 ATTCTTGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATT 62187 |||||| || || || ||||| | |||||| || | || | || ||||| ||||| Sbjct 6622711 ATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGATT 6622652 Query 62188 AACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTC 62247 |||| || || ||||| || | || || || ||||| || || ||||| || | ||| Sbjct 6622651 CACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTC 6622592 Query 62248 CACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAA 62307 | ||||| || || |||| || || || || || || || ||||| || |||| || Sbjct 6622591 AATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAG 6622532 Query 62308 TAAACTATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAG 62367 | ||| || || | |||| | ||| || || || || | | ||| | ||| || Sbjct 6622531 CAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCACAG 6622472 Query 62368 ATCCGACGGTACAACNNNNNNNNNNNNNNNT--TGTAGAATACCGTTACTGGCGTACGAT 62425 | | || | | | || || || || || ||| || || Sbjct 6622471 CTTGGTGGG--CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGGAG 6622414 Query 62426 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 62485 ||| | ||||| ||||| || || || | || || || || || |||| | || Sbjct 6622413 CCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGCG 6622354 Query 62486 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGCGCTTCCAGGCTATCAAAT 62545 | || || ||||| || ||||| | | || || ||||| || |||| || ||| Sbjct 6622353 GCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTCGAAT 6622294 Query 62546 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTA 62605 | | | | ||| || || | |||||| || ||||| ||||| || || || || | Sbjct 6622293 GCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCGG 6622234 Query 62606 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62665 || | ||| || || | || || || || | || || | ||||||||||| || || Sbjct 6622233 TGACGCTTGTTGGACTTCTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCTTG 6622174 Query 62666 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCA 62725 || | |||| |||||||||||||| ||||| ||||| ||| ||||| || Sbjct 6622173 TTCAAATTTTTGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAAGTCCGC 6622114 Query 62726 TCT---ATTACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTA 62782 ||| | ||| ||||||| | ||| | || ||||||||||| ||||| ||||| | | Sbjct 6622113 TCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCTCGTCA 6622054 Query 62783 GCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTT 62842 | | || | || || || ||||| || || || | ||||||||| || | || Sbjct 6622053 CCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTC 6621994 Query 62843 TGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCA 62902 || || || ||||| |||| || | || || || || ||| |||| || |||||||| Sbjct 6621993 TGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTCC 6621934 Query 62903 ATCTGAGATTCTATAATCGCTTTCCAGA-CGACTCGAGCCTTTATTATAGATTTGTATCT 62961 |||| || || || || || | ||| | | || ||||||| | | | || | Sbjct 6621933 GTCTGGGACTCAATGATGGCGTGCCAAAGCTGCT-GAGCCTTCACCACACGCTTCACCCG 6621875 Query 62962 CTTTTCTCTTTCGTAT--AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCC 63019 |||| | || ||| ||||| | || |||||||| || ||||| | |||| Sbjct 6621874 GCCTTCTTTCTCATATGAGGTGTAGAGCTTC--TCGAACTCCTCCCCCCAGCACTCGTCC 6621817 Query 63020 AGTCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTC 63079 || || || ||||| | |||||||||| ||||| || ||| || ||| | ||| Sbjct 6621816 AGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTTC 6621757 Query 63080 ATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTT 63139 || || || || || ||||| || || || || ||||||| || || ||||| ||| Sbjct 6621756 ATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTT 6621697 Query 63140 CCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTAT 63199 ||||| || || || || || ||||| | | | |||| | ||||| || |||||||| Sbjct 6621696 CCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTAC 6621637 Query 63200 ATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTA 63259 ||||| | | |||| |||| ||||| || ||||| || | ||| | || ||||| || Sbjct 6621636 ATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTG 6621577 Query 63260 TAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTT 63319 || ||||||| ||| || | | ||||||||| | || ||||| || | ||| ||||| Sbjct 6621576 TACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTAGCTC 6621517 Query 63320 CCACTGGCACGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAAT 63379 || | | || || || | || | || ||||| || ||| || ||||| | Sbjct 6621516 CCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATGAGG 6621457 Query 63380 GCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGA 63439 ||||| | || | ||||| || || ||||| || || || || ||||| || || Sbjct 6621456 GCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGG 6621397 Query 63440 AAACAGCTAGACA 63452 || ||||| |||| Sbjct 6621396 AAGCAGCTGGACA 6621384 Score = 167 bits (184), Expect = 3e-36 Identities = 368/549 (67%), Gaps = 2/549 (0%) Strand=Plus/Minus Query 63512 TCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACT 63571 || || || || ||||| || ||||| |||| || ||||| || || ||||| || Sbjct 6621337 TCTGACAGCAGGTTGTAGGTTTCAATCGCTGCTTCGATATCTTTTTCGTGGATTCCGACA 6621278 Query 63572 GCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAG 63631 | || | ||| | ||||||||| || | || | | ||| || || ||||||| | Sbjct 6621277 GAAACCCTCATGAGCATGTGCTGTGGCCGCTCTGCCACTTTGCCATTGATCTTCAACAGG 6621218 Query 63632 TAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATA 63691 || || || | ||| || || ||||| | || || || || || || ||||| || Sbjct 6621217 TAAGACCGCTCTAGAGTCTTGAAGCCAAAGAAATTATACGAGAAATCGCGGTCGTAGATT 6621158 Query 63692 ATAACCGAGTTGAGTTTATCCTTATATTTGTTAACTACATCCATGGTAATACTTGAA-AT 63750 || ||||||||||| || || | | ||| | || | || | |||| | || Sbjct 6621157 ATGGCCGAGTTGAGTCGGTCTTTGTTTGCAAGAACAATGTCGAGCGTC-TCCTTGGAGAT 6621099 Query 63751 AATAGGAAAATGTTTCCCATTTTTAGGATTGACATAGTTGAATAAATCCTCCATCACTTC 63810 || || | ||| |||| || || ||||||||| | | |||||||||||| || Sbjct 6621098 CATGGGGGAGTGTCGTTTATTTAAGGGGTTCACATAGTTGTACAGATCCTCCATCACCTC 6621039 Query 63811 ACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAAT 63870 || || | ||| || || || ||||| || ||||| || || || | || ||||| || Sbjct 6621038 GCTGAACACTTTCTTCGTCTCCTTGTGCAGGTTTGAGACAGCGATCCGTGCAGCTAGGAT 6620979 Query 63871 GGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCAA 63930 ||| || || || |||| || || |||||| || || |||||||||| ||||| | Sbjct 6620978 GGCGTAGTCGGGGTGTTTGGTCGTGAGAGTGGCGGCGATCTCGGCTGCCAACGTGTCGAG 6620919 Query 63931 TTCTACCGTTGTTACACCATTATATATTCCTTGGATAACCTTCATAGCTATTTTAATAGG 63990 || ||||| || || ||| | || | || ||||| |||||||| | || | || Sbjct 6620918 CTCCACCGTCGTGACTCCACTGTACAGACCCTGGATCACCTTCATCGTGATCTGGGCCGG 6620859 Query 63991 ATCTATATGATCAGTGTTTAAGCCATAACATAATTTTCTAATACGAGATGTGATTTTATC 64050 ||| | | || | ||| | ||| || || | || || ||||| |||||||| || Sbjct 6620858 ATCCACAAAGTCCGAGTTCAGGCCGTAGCACAGCTTCTGGATGCGAGAAGTGATTTTGTC 6620799 Query 64051 AAACATGAC 64059 |||||||| Sbjct 6620798 GAACATGAC 6620790 Score = 102 bits (112), Expect = 1e-16 Identities = 125/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 61917 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 61976 |||| ||||| || ||||| || || |||||| ||| | || || || || || || | Sbjct 6623381 TCCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGT 6623322 Query 61977 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCT 62036 |||| || || || || ||||||||||| || | || || ||||| || |||| |||| Sbjct 6623321 TCATGGACTGGCTCTGGTCGATGAAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 62037 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62087 | || | |||||||| | |||||||| | |||| | ||| ||||||| Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTTATACAGCTGCTTCAGATCATCTGGAA 6623211 >seq18 Length=14161719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 63070 CACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATG 63129 |||||||||||| ||||| || || ||||| || || | || | ||||||| ||| || Sbjct 3646043 CACTCGTTTCATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTG 3646102 Query 63130 TTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGG 63189 ||||| || ||||| ||||| || | || | ||| | | | ||||| ||||||||| Sbjct 3646103 CTCCTCTTTGCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGG 3646162 Query 63190 TTCCAAGTA 63198 |||| ||| Sbjct 3646163 CTCCAGGTA 3646171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633588025939200