Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2 466 3e-126 seq390 118 2e-21 seq73 118 2e-21 seq18 114 2e-20 seq4 113 9e-20 seq801 93.3 8e-14 >seq2 Length=17630497 Score = 466 bits (516), Expect = 3e-126 Identities = 941/1382 (68%), Gaps = 38/1382 (3%) Strand=Plus/Minus Query 244010 GAGCCCTTGTGGACGATGAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC 244069 |||||| |||| | || ||||| | ||| | ||||||||||| || | |||| Sbjct 6622734 GAGCCCGTGTGAGCAATCAGCTGATTCTTCATATCTTCGTTCCACAGCCCT---CTCTCC 6622678 Query 244070 ---AGCGCCTCGACCAGGTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGC 244126 || | | || ||| || ||||| | ||| |||||||| || || || | ||| Sbjct 6622677 GTCAGGTCTTTGAGCAGATGGGGATTCACTATCTGGAACTCTCCGGAGAGGACCCTGCGG 6622618 Query 244127 TGGTAGAGGTTGCTGCTGAGCGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTG 244186 ||||| ||||||| || | || ||| ||| |||||||||| ||||| || ||| Sbjct 6622617 GTGTAGATGTTGCTGGTGTAGGCTTCAATGGACTCGTTGTTGCCCAGGATCTGGGCGGTG 6622558 Query 244187 CTCGCAGTCGGCATGGGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGG 244246 || || ||||| || | || |||||||||||||||||| |||||| | ||| Sbjct 6622557 GAGGCGGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACCCCGTGCTTGGCGATCTTT 6622498 Query 244247 AGTCTGAGCTCGTTCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATG 244306 ||||| ||||||||||||| || | | || | || | |||||||| Sbjct 6622497 TCCTTGAGCAGCTTCCAGTCCCACA-GCTTG-GTGGGCGTCTTCT-------CCCACATG 6622447 Query 244307 TCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCG 244366 || |||| || | ||||||||||||||| ||| ||||| ||| |||||| ||| | Sbjct 6622446 TCGTACTGGAGGATGCCCTTGCTGACGGGGGAGCCTTCGTATGTCTCGTAGGGGCCGA-G 6622388 Query 244367 CGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCAT 244425 | | | |||||||| ||||| | || |||||||| |||||||||||||| ||||| Sbjct 6622387 CTCGGCGGCCAGCTCGCAGCTGCCCTCCAGGGCGGCATAGTAGATGGTCTCAAAGATTTG 6622328 Query 244426 CTTGTTCATGTCGCGG-GCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGT 244484 |||||| | || | |||| || ||| | | | ||| | |||||| || Sbjct 6622327 AATGTTCA-GCAGCTGCGCCTCAGGGCTTTCGAATGCGTGACGCATGAGGATGAAGGTGT 6622269 Query 244485 CGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTT 244544 | |||| || || || ||||| || || || | ||| ||||||||||| | || | Sbjct 6622268 CTGCCAAACCTTGGACACCGATTCCTATTGGCCGGTGACGCTTGTTGGACTTCTCTGCCT 6622209 Query 244545 CGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCA-TGCGG 244603 | ||||| ||||| ||||| || || | |||||| | || | || | | || Sbjct 6622208 CAGGCACTGGGTAGAAGTTAATATCTATGATCTTGTTCAAATTTTTGACAATTACTTTGG 6622149 Query 244604 ACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTC 244663 | || | || || | |||||| | || || || ||| | | Sbjct 6622148 TC-ACATAAGCTAGTTTTTTAAAGTCAAA-----AG------TCCGCTCTGGGG----TG 6622105 Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 ||| || |||||| |||| |||||| || |||||||| ||||| || | ||||| Sbjct 6622104 ACATACATGTTGAGTGCGATTGAGGCCAGATTACAGACGGCGACCTCGTCACCGCTGGTG 6622045 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| | || || ||||| ||||| |||| ||||||||||||||||| ||| || ||| Sbjct 6622044 TACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGATGGTTG 6621985 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| |||||||| ||| |||||||||||| | ||| || || || ||||| Sbjct 6621984 CTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTCCGTCTGGGAC 6621925 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 | | || | || ||| || | | |||||| ||| | || ||| ||| | Sbjct 6621924 TCAATGATGGCGTGCCAAAGCTGCTGAGCCTTCACCACACGCTTCACCCGGCCTTCTTTC 6621865 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 || || |||||| || ||||||||| |||||| |||||| || |||||||| Sbjct 6621864 TCATATGAGGTGTAGAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCAGCCCGGGGCAT 6621805 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 || ||||| ||| ||| || || | || ||||||| |||||| |||||| Sbjct 6621804 TCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTTCATGAACAGGTCG 6621745 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 |||||||| ||||| | ||||||||| |||| ||||||||| ||| || ||||| ||| Sbjct 6621744 GGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTGTGTTTTTC 6621685 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 ||||||||| |||||||| || || | |||||||||||||| ||| | |||| || Sbjct 6621684 TTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTACATGGCGAAAGCT 6621625 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGG 245203 ||||||| ||||||||| |||||||| || || | | |||| | | | ||| Sbjct 6621624 CCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTGTACACTCTCAGC 6621565 Query 245204 GTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT-TGCCCCT 245262 | || |||| || || |||| |||||||||||| |||||| || |||| | | Sbjct 6621564 ATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATGTA-GCTCCCTGTTGATCG 6621506 Query 245263 GAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTT 245322 || | ||||| | || ||| | ||| ||||| |||||||||||||||||| ||| Sbjct 6621505 GATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGGAGATGAGGGCGCACTGCTT 6621446 Query 245323 GATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGA 245382 | || || || ||||| |||||||| |||||| |||||| |||||| ||| Sbjct 6621445 CAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGGCGAGCAGGAAGCAGCTGGA 6621386 Query 245383 CA 245384 || Sbjct 6621385 CA 6621384 >seq390 Length=2268 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| || ||||||| ||||||||| Sbjct 1919 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1978 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1979 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 2037 Query 42825 GACGAGG 42831 || |||| Sbjct 2038 GATGAGG 2044 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||| ||||| Sbjct 1741 CTGTTCAACGCCATCGAGACCCTGCCCTGCGTCAAGAAGAAGGCAGACTGGGCGATCAAC 1800 Query 42669 TGGATCG 42675 ||||||| Sbjct 1801 TGGATCG 1807 >seq73 Length=1910340 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| || ||||||| ||||||||| Sbjct 1745375 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1745316 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1745315 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 1745257 Query 42825 GACGAGG 42831 || |||| Sbjct 1745256 GATGAGG 1745250 Score = 118 bits (130), Expect = 2e-21 Identities = 104/127 (82%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| || || ||||||| ||||| ||||||||||| || ||||||| ||||||||| Sbjct 1749267 TGGTGGCGTTCGCCGCCGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCT 1749208 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| | ||||||||| || |||||||| ||||| ||||||||||| Sbjct 1749207 GGCTGAAGAAGAGAGGCCT-GATGCCCGGCCTGACCTTCTCCAACGAGCTCATCAGCAGA 1749149 Query 42825 GACGAGG 42831 || |||| Sbjct 1749148 GATGAGG 1749142 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 1744322 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 1744263 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1744262 TGTGGGCGAGTACCAG 1744247 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||| ||||| Sbjct 1745553 CTGTTCAACGCCATCGAGACCCTGCCCTGCGTCAAGAAGAAGGCAGACTGGGCGATCAAC 1745494 Query 42669 TGGATCG 42675 ||||||| Sbjct 1745493 TGGATCG 1745487 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| ||||| |||||||| ||||||||||||| ||||||||| ||||| Sbjct 1749445 CTGTTCAACGCCATCGAGACCCTGCCCTGCGTCAAGAAGAAGGCAGACTGGGCGATCAAC 1749386 Query 42669 TGGATCG 42675 ||||||| Sbjct 1749385 TGGATCG 1749379 >seq18 Length=14161719 Score = 114 bits (126), Expect = 2e-20 Identities = 108/138 (78%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 245011 CATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGA 245070 |||||||||||| |||||||| ||||| ||| | ||| |||| |||||||| || Sbjct 3646052 CATGAAGAGGTCTGGGATCCACAGGGCAAAGAACAAGTCTCTGGCTCTCTGCTCCTCTTT 3646111 Query 245071 GCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTA 245130 ||| ||||||||| ||| |||||| || ||||| || || | ||||| ||||||| ||| Sbjct 3646112 GCCTGTGTTCTTCTTCAACTCCAAGAATTCAAACACATCAGCATGCCACGGCTCCAGGTA 3646171 Query 245131 GACAGCGAGGGCGCCGGG 245148 ||||||| ||| || || Sbjct 3646172 CACAGCGAAGGCCCCCGG 3646189 Score = 89.7 bits (98), Expect = 1e-12 Identities = 87/112 (78%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||||||| || ||||| ||||| || || ||| | |||||||| Sbjct 3645530 CACCTCATCTTTGCTTGTGTACTCTACTATCTCCGTGCACAGATTGCTGGATTTGATGGT 3645589 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||||| ||| || || ||| ||||||||||||||||||||| ||| Sbjct 3645590 GCCCAGGTTCTGCTGGTTACTCTTCCTGTTGCAGGCGTCCTTGTAGAGTATG 3645641 >seq4 Length=14220794 Score = 113 bits (124), Expect = 9e-20 Identities = 107/134 (80%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 ||| | || || || || | || || ||||||||||||||||| ||| ||||||| ||| Sbjct 7897676 GAGCGACTCGTGGCATTCGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCCTTCGCTTCC 7897617 Query 42759 ATCTTCTGGCTCAAGCAGAAGGTGTC-GATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 |||| ||||||||| | | || | | ||||||||| || |||| ||| ||||| || || Sbjct 7897616 ATCTATTGGCTCAAGAA-ACGGGGACTGATGCCCGGTCTTACCTACTCCAACGAGCTGAT 7897558 Query 42818 CAGCAGGGACGAGG 42831 |||||||||||||| Sbjct 7897557 CAGCAGGGACGAGG 7897544 >seq801 Length=1329 Score = 93.3 bits (102), Expect = 8e-14 Identities = 66/76 (87%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| |||||||||||||| ||||||| ||||||||||| || |||||||| Sbjct 600 CCCCTTCGACTTCATGGAGAACATCTCTCTGGAGGGAAAGACCAACTTCTTTGAGAAGCG 541 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 540 TGTGGGCGAGTACCAG 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944273662859520