Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq3 116 4e-21 seq6 100 3e-16 seq18 96.9 4e-15 seq59 91.5 2e-13 seq52 91.5 2e-13 seq98 89.7 6e-13 seq71 89.7 6e-13 seq55 87.8 2e-12 >seq3 Length=24902066 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | ||||| || | ||| | ||| || || || || ||||| |||| Sbjct 14701295 CCTCCTCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 14701354 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||||||||| || || || | ||||||||| | ||| Sbjct 14701355 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 14701414 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || ||| | || | || ||||| || | || || Sbjct 14701415 ATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACC 14701474 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| |||||||| ||||| Sbjct 14701475 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701521 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| |||| ||| | ||| || || || || || || || | Sbjct 14701979 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAG 14702038 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || |||||||| || ||||| || || || | |||||| || | || Sbjct 14702039 AGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGG 14702098 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || ||||||||| ||| || || | | | || ||||| || | || || Sbjct 14702099 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCAACC 14702158 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || || ||||| |||||||||||||| Sbjct 14702159 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 14702205 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | |||||| || | ||| | ||| || ||||| || |||||||||| Sbjct 14702551 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702610 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 14702611 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 14702670 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| ||| || || | | | | ||||| || | || || Sbjct 14702671 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACC 14702730 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | || ||||||||||| || || ||||| || ||||| ||||| Sbjct 14702731 TCAAGGGTAATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 14702777 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 || || || | ||||| || | ||| | ||| ||| || || || ||||| |||| Sbjct 14702779 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 14702838 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || | || || |||||||| || || || || || | ||||||||| | || Sbjct 14702839 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702898 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 42161 | || || |||||| ||| || || | | | | ||||| || | ||| || Sbjct 14702899 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACC 14702958 Query 42162 TCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||||||||| || || || || |||||||| ||||| Sbjct 14702959 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 14703005 >seq6 Length=17716291 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | ||| | || | ||| |||||| || || ||||| |||| Sbjct 10619603 ACCCCCTCTCAGACGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10619662 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || ||||||||||| || Sbjct 10619663 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGG 10619722 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | || ||||| | ||||| Sbjct 10619723 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCAC 10619782 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 10619783 CTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | | | | || | ||| |||||| || || ||||| |||| Sbjct 10620515 ACCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10620574 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || ||||||||||| || Sbjct 10620575 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGG 10620634 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | || ||||| | ||||| Sbjct 10620635 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCAC 10620694 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTTCAC 42214 || | |||||||| ||||| || || ||||| |||||||| ||||| || || Sbjct 10620695 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATCTTGAC 10620748 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | | | | || | ||| |||||| || || ||||| |||| Sbjct 10619831 ACCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10619890 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || ||||||||||| || Sbjct 10619891 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGG 10619950 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | || ||||| | ||||| Sbjct 10619951 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCAC 10620010 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 10620011 CTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620058 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | | | | || | ||| |||||| || || ||||| |||| Sbjct 10620059 ACCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10620118 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || ||||||||||| || Sbjct 10620119 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGG 10620178 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | || ||||| | ||||| Sbjct 10620179 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCAC 10620238 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 10620239 CTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620286 Score = 96.9 bits (106), Expect = 4e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| ||||| | ||| | | | | || | ||| |||||| || || ||||| |||| Sbjct 10620287 ACCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 10620346 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || | || || |||||||| || || || || || ||||||||||| || Sbjct 10620347 GAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGG 10620406 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | || |||||| ||| ||| || || | || | | || ||||| | ||||| Sbjct 10620407 GATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCAC 10620466 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || | |||||||| ||||| || |||||||| || ||||| ||||| Sbjct 10620467 CTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620514 >seq18 Length=14161719 Score = 96.9 bits (106), Expect = 4e-15 Identities = 70/81 (86%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 57002 ATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCAC 57061 ||| ||||| || | | |||||||||| ||||||||||||||||||||| |||||||| Sbjct 13506718 ATTATCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCAC 13506659 Query 57062 CACTATACTACCGAGGATTGA 57082 |||||||||| |||||| ||| Sbjct 13506658 CACTATACTAACGAGGAGTGA 13506638 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||||| ||||| Sbjct 13511152 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCTCCACT 13511093 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 13511092 ATACTAACGAGGAGTG 13511077 >seq59 Length=2817345 Score = 91.5 bits (100), Expect = 2e-13 Identities = 67/78 (86%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||||||||||||||||||| |||| ||||||| Sbjct 2281231 TCTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACGCACCACT 2281290 Query 57066 ATACTACCGAGGATTGAA 57083 |||||| |||||| |||| Sbjct 2281291 ATACTAACGAGGAATGAA 2281308 >seq52 Length=8204060 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/92 (83%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 56997 GAAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 || ||||| |||| || | | |||||||||| ||||| |||||||||||||||| ||| Sbjct 7703759 GAGAAATTACCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATA 7703818 Query 57057 CTCACCACTATACTACCGAGGATTGAATATAT 57088 || ||||||||||| |||||| || |||||| Sbjct 7703819 CTGTCCACTATACTAACGAGGAATG-ATATAT 7703849 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | |||||||||| ||||| |||||||||||||||| ||||| ||||| Sbjct 7701009 TCTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACT 7701068 Query 57066 ATACTACCGAGGATTGA 57082 |||||| |||||| ||| Sbjct 7701069 ATACTAACGAGGAATGA 7701085 Score = 86.0 bits (94), Expect = 7e-12 Identities = 72/88 (82%), Gaps = 3/88 (3%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7702671 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7702730 Query 57067 TACTACCGAGGATTGAATATATAACTTG 57094 ||||| |||||| || ||||||| || Sbjct 7702731 TACTAACGAGGAATG---ATATAACATG 7702755 Score = 84.2 bits (92), Expect = 2e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7698835 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7698894 Query 57067 TACTACCGAGGATTGA 57082 ||||| |||||| ||| Sbjct 7698895 TACTAACGAGGAATGA 7698910 Score = 82.4 bits (90), Expect = 8e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||| |||||||||||||||| ||||| |||||| Sbjct 7696552 CTCCCCGTCGGGGAATCGAACCCCGGTCTTCCGCGTGACAGGCGGAGATACTGTCCACTA 7696611 Query 57067 TACTACCGAGGATTG 57081 ||||| |||||| || Sbjct 7696612 TACTAACGAGGAATG 7696626 >seq98 Length=799208 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 57007 CTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 57066 |||| || | | |||||||||| ||||||||||||||||||||| ||||||||||||| Sbjct 3653 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 3594 Query 57067 TACTACCGAGGA 57078 ||||| |||||| Sbjct 3593 TACTAACGAGGA 3582 >seq71 Length=1782952 Score = 89.7 bits (98), Expect = 6e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 1199663 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 1199604 Query 57066 ATACTACCGAGGATTGA 57082 |||||| |||||| ||| Sbjct 1199603 ATACTAACGAGGAGTGA 1199587 >seq55 Length=4898074 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 57006 TCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 57065 ||||| || | | ||| |||||| ||||||||||||||||||||| |||||||||||| Sbjct 32114 TCTCCCCGTCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 32173 Query 57066 ATACTACCGAGGATTG 57081 |||||| |||||| || Sbjct 32174 ATACTAACGAGGAGTG 32189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543175101031680