Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq2 167 2e-36 seq18 86.0 6e-12 >seq2 Length=17630497 Score = 167 bits (184), Expect = 2e-36 Identities = 739/1153 (64%), Gaps = 43/1153 (4%) Strand=Plus/Plus Query 94071 CTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAA 94130 ||||||| ||| ||||| |||| |||||| || || ||||| ||||| | || | ||| Sbjct 6621520 CTACATCGCCGGCACCAACGGCAACTCCAATGGTCTAGTCCCCATGCTGAGAGTGTACAA 6621579 Query 94131 CAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTA 94190 |||| ||||||| ||||| |||||||| || | |||| || ||||||| | || Sbjct 6621580 CAACACGGCGCGGTACGTCGACCAGGGCGGCAACAAGAGGCCCGGAGCTTTCGCCATGTA 6621639 Query 94191 TCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAA 94250 | |||||||||||| || ||| | ||| | || ||| || ||| || || Sbjct 6621640 CTTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGCTGAAGAAAAACACAGGAAA 6621699 Query 94251 CGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAA 94310 || | ||||||||||||||||||||||||| || ||| | || ||||| || ||||| Sbjct 6621700 GGAGGAGCAGAGGGCCAGAGACCTCTTCTACGCCCTGTGGATCCCCGACCTGTTCATGAA 6621759 Query 94311 ACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTC 94370 | || |||| ||| | |||| ||| | ||||| || ||||| ||||| ||| Sbjct 6621760 GAGGGTGGAGACCAACGAGGACTGGTCTCTGATGTGTCCAAACGAATGCCCCGGGCTGGA 6621819 Query 94371 CGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGC 94430 ||| || || | || || | | || | || || | | | ||||| Sbjct 6621820 CGAGTGCTGGGGGGAGGAGTTCGAGAAGCTCTACACCTCATATGA---GAAAG--AAGGC 6621874 Query 94431 CAG--GAAG---GTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTG 94485 | | |||| || || | ||| | |||| ||| | ||| | || ||| | Sbjct 6621875 CGGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTTTGGCACGCCATCATTGAGTCCCAGACG 6621934 Query 94486 GAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAG 94545 || || || ||||| ||||| | | ||| ||||| |||| ||| |||||| ||| Sbjct 6621935 GAAACTGGCACGCCATACATGCTCTACAAAGACTCCTGCAACAGGAAGAGCAACCATCAG 6621994 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || ||||||||| || |||||||| || || | ||||| || | || Sbjct 6621995 AACCTGGGCACCATCAAGAGCAGCAACCTGTGCACAGAAATCATTGAGTACAC--CAGCG 6622052 Query 94606 --GACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATG 94663 |||||| | || || ||||| |||| ||| ||| | || || | || | Sbjct 6622053 GTGACGAGGTCGCCGTCTGTAATCTGGCCTCAATC--GCACTCAACATGTATGTCA---C 6622107 Query 94664 CCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT--TGTGAACTTCGCGGGAAG-GA 94720 || | | | ||| | || | | |||| ||||| | ||| | Sbjct 6622108 CCCAGA-GCGGACTTTTGACTTTAA--AAAACTAGCTTATGTGACC-------AAAGTAA 6622157 Query 94721 TGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGA 94780 | ||| || |||||| | | || || | ||||||||||| || || ||||| |||| Sbjct 6622158 TTGTCAAAAATTTGAACAAGATCATAGATATTAACTTCTACCCAGTGCCTGAGGCAGAGA 6622217 Query 94781 ACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGG 94840 | || ||| | || ||||| || || ||||| ||||| ||||| || ||| | | Sbjct 6622218 AGTCCAACAAGCGTCACCGGCCAATAGGAATCGGTGTCCAAGGTTTGGCAGACACCTTCA 6622277 Query 94841 TGATGATGCGTCTGCCCTACGA---CTCTGTCGACGCGGCGGGTTTGAATTTGAACATAT 94897 | | ||||||| | | ||| | ||| | ||| || | |||| | | || | Sbjct 6622278 TCCTCATGCGTCACGCATTCGAAAGCCCTG-AGGCGCAGCTG--CTGAACATTCAAATCT 6622334 Query 94898 TCGAAAGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCG 94957 | || | ||| || || | ||| || | | | | ||||| | || || Sbjct 6622335 TTGAGACCATCTACTATGCCGCCCTGGAGGGCAGCTGCGAGCTGGCC---GCCGAGCTCG 6622391 Query 94958 GGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTTTTCAGTTCGACCTCT 95017 | || |||| | | | || || ||| | ||||||| | |||| |||| | | Sbjct 6622392 GCCCCTACGAGACATACGAAGGCTCCCCCGTCAGCAAGGGCATCCTCCAGTACGACATGT 6622451 Query 95018 GGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCT-CTACGCGCTGATGTTATCAAA 95076 ||| || |||| | |||| |||| ||||||| || | | | ||| Sbjct 6622452 GGGAGAAGACGCCCACCAAGCTGTGGGACT-GGAAGCTGCTCAAGGAAAAGATCGCCAAG 6622510 Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 ||||| |||| ||| ||||| ||||||| |||||||| |||||||| || |||||| Sbjct 6622511 CACGGGGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCCCAGATC 6622570 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTC 95196 || |||||||||||||| | ||| ||| |||| |||| | |||| | | |||| ||| Sbjct 6622571 CTGGGCAACAACGAGTCCATTGAAGCCTACACCAGCAACATCTACACCCGCAGGGTCCTC 6622630 Query 95197 GCCGGGGAATTCC 95209 |||| || |||| Sbjct 6622631 TCCGGAGAGTTCC 6622643 >seq18 Length=14161719 Score = 86.0 bits (94), Expect = 6e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 95077 CACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATC 95136 |||||||||| ||| ||||| ||||||||||||||||||||||||| || || ||| Sbjct 3644699 CACGGTGTGAGGAACAGTCTGCTGTTGGCCCCCATGCCCACGGCCTCCACTGCCCACATC 3644640 Query 95137 CTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTAC 95181 || || ||||| ||||| | || ||| |||| |||| | ||| Sbjct 3644639 CTGGGGAACAATGAGTCAGTTGAGGCCTACACCAGCAACATTTAC 3644595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494688866209920