Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq2 100 3e-16 seq18 86.0 6e-12 seq3 86.0 6e-12 >seq2 Length=17630497 Score = 100 bits (110), Expect = 3e-16 Identities = 426/664 (64%), Gaps = 23/664 (3%) Strand=Plus/Plus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 ||||| || ||||| |||||||||||||||||| ||||||||||||| | ||| || Sbjct 6621935 GAAACTGGCACGCCATACATGCTCTACAAAGACTCCTGCAACAGGAAGAGCAACCATCAG 6621994 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATA---CAGCGAT 123722 ||| |||| || || || | || || || ||| | ||||| || || || ||||| | Sbjct 6621995 AACCTGGGCACCATCAAGAGCAGCAACCTGTGCACAGAAATCATTGAGTACACCAGCGGT 6622054 Query 123723 GCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGCGTGAATCGTTGCGT----CGA 123778 | || | || ||||| |||||| |||| || || | || | || | | Sbjct 6622055 GACG---AGGTCGCCGTCTGTAATCTGGCCTCAATCGCACTCAACATGTATGTCACCCCA 6622111 Query 123779 AAACGGCGCTTTTAATTTCCAAACGCT--CAAACGCATAACAAAAACTGTAGTAAAGAAT 123836 | ||| ||||| | || ||| || | | | | || ||| | || || ||| Sbjct 6622112 GAGCGG-ACTTTTGACTTTAAAAAACTAGCTTATG--TGACCAAAGTAATTGTCAAAAAT 6622168 Query 123837 TTGAACAAAATTATCGATGTTAATTTTTATCCTTTG---GAGGAAGCGCGTTTGTCTAAT 123893 |||||||| || || ||| |||| || || || || |||| || | ||| || Sbjct 6622169 TTGAACAAGATCATAGATATTAACTTCTACCCAGTGCCTGAGGCAGAG---AAGTCCAAC 6622225 Query 123894 TTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTG 123953 | ||| | || | ||| | || | ||||| ||||| ||| | || | | || Sbjct 6622226 AAGCGTCACCGGCCAATAGGAATCGGTGTCCAAGGTTTGGCAGACACCTTCATCCTCATG 6622285 Query 123954 CG-CATGCCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAAT 124012 || || | | | ||||||| || || || |||| || | ||||| || || || Sbjct 6622286 CGTCACG-CATTCGAAAGCCCTGAGGCGCAGCTGCTGAACATTCAAATCTTTGAGACCAT 6622344 Query 124013 TTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAG 124072 || || | ||| |||||| |||||||| || || | |||| | ||||| | Sbjct 6622345 CTACTATGCCGCCCTGGAGGGCAGCTGCGAGCTGGCCGCCGAGCTCGGCCCCTACGAGAC 6622404 Query 124073 TTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACC 124132 |||| ||| ||| | ||| || || | ||||||||||||||| | || || Sbjct 6622405 ATACGAAGGCTCCCCCGTCAGCAAGGGCATCCTCCAGTACGACATGTGGGAGAAGACGCC 6622464 Query 124133 GACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAA 124192 || || |||||||||||| | | || || || | | |||||| || | || Sbjct 6622465 CACCAAGCTGTGGGACTGGAAGCTGCTCAAGGAAAAGATCGCCAAGCACGGGGTGAGGAA 6622524 Query 124193 CTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGA 124252 | ||| || |||| ||||| || || |||| || || || | || |||||||| Sbjct 6622525 CAGTCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCCCAGATCCTGGGCAACAACGA 6622584 Query 124253 ATCC 124256 ||| Sbjct 6622585 GTCC 6622588 >seq18 Length=14161719 Score = 86.0 bits (94), Expect = 6e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 123591 ATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGG 123650 |||||| | ||| ||||| || || |||||||| |||||||| ||||||||||||||| Sbjct 3645673 ATCGAATCTCAAACAGAAACGGGCACACCGTACATACTCTACAAGGACGCCTGCAACAGG 3645614 Query 123651 AAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATC 123710 || | || ||| ||| |||| || || |||| || ||||| ||| | || || | Sbjct 3645613 AAGAGTAACCAGCAGAACCTGGGCACCATCAAATCCAGCAATCTGTGCACGGAGATAGTA 3645554 Query 123711 GAATACA 123717 || |||| Sbjct 3645553 GAGTACA 3645547 >seq3 Length=24902066 Score = 86.0 bits (94), Expect = 6e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 45128 CAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATC 45187 ||| || ||||| || || ||||| |||||||| || ||||| || ||| ||| Sbjct 14702337 CAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAGAGGGTGCGGCCATC 14702396 Query 45188 GTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATC 45247 || | || ||||| || | |||| | |||||||| || ||||||||||| || || Sbjct 14702397 TTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGAATGCCTTCCTTGTC 14702456 Query 45248 TTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCG 45306 || | | || || | || | || || |||||| | ||| || || ||||| | | Sbjct 14702457 CTGGA-TCTTGGTCTTCACGTTCTCCACAGTGTCGCTGGGCTCTACCTCAAGAGTGATGG 14702515 Query 45307 TTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || || || || || ||||||||||| Sbjct 14702516 TCTTGCCTGTGAGGGTCTTGACGAAAATTTGCAT 14702549 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | || | || || ||||| || || ||||| || ||||| ||||| ||| Sbjct 14701064 ATGCCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701123 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| |||| || || || || | |||| || |||||||| || Sbjct 14701124 GAGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGA 14701183 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||||||||| || || || || || || | || | |||||| | ||| Sbjct 14701184 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCA 14701243 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || |||| || ||||| || || || || ||||| || ||||| Sbjct 14701244 ACCTCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 14701293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451971830977920