Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq2 203 4e-47 seq390 87.8 2e-12 seq73 87.8 2e-12 seq18 86.0 8e-12 >seq2 Length=17630497 Score = 203 bits (224), Expect = 4e-47 Identities = 606/916 (66%), Gaps = 37/916 (4%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 ||||||||| | ||||| | |||| | |||| ||||| |||| ||| ||||| |||||| Sbjct 6622614 TAGATGTTGCTGGTGTAGGCTTCAATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAG 6622555 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || |||||||| || |||| || || ||||| | | || | || |||| Sbjct 6622554 GCGGTGGGCATCGGGGCCAGCAGCAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCC 6622495 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGT---CTCCCCCTCCCACATATCAAACTGG 116079 ||||| | |||||| | ||||| || | | ||||||||| || ||||| Sbjct 6622494 TTGAGCAGCTTCCAGTCCCAC---AGCTTGGTGGGCGTCTTCTCCCACATGTCGTACTGG 6622438 Query 116080 AGGATACCTTGG--GACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCG 116137 ||||| || | | |||| || || || || ||||||| || ||||| | | | Sbjct 6622437 AGGATGCCCTTGCTGACG--GGGGAGCCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGG 6622380 Query 116138 CCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCA 116197 ||| ||| |||| |||| ||||| || | || || |||||||| || || |||| Sbjct 6622379 CCAGCTCGCAGCTGCCCTCCAGGGCGGCATAGTAGATGGTCTCAAAGATTTGAATGTTCA 6622320 Query 116198 TTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGAC 116257 || ||||| | || || ||| |||| | || || || || | || Sbjct 6622319 GCAGCTGCGCCTCAGGGCTTTCGAATGCGTGACGCATGAGGATGAAGGTGTCTGCCAAAC 6622260 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CA 116314 |||||||||||| || ||||| || || | | | || ||||| || ||| || Sbjct 6622259 CTTGGACACCGATTCCTATTGGCCGGTGACGCTTGTTGGACTTCTCTGC---CTCAGGCA 6622203 Query 116315 CGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTT 116374 | || || || || |||| || | | | || | ||||||| | || || || | Sbjct 6622202 CTGGGTAGAAGTTAATATCTATGATCTTGTTCAAATTTTTGACAATTACTTTGGTCA--- 6622146 Query 116375 CATGAAGCT--TTTCGTAA--TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGG 116430 ||| ||||| ||| ||| |||||| | || |||| |||||||| | || Sbjct 6622145 CAT-AAGCTAGTTTTTTAAAGTCAAAAGTCCG---CTCTGGGGTGACATACATGTTGAGT 6622090 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 |||||||| ||||||||||| || | | ||| || |||||||| || ||||| Sbjct 6622089 GCGATTGAGGCCAGATTACAGACGGCGACCTCGTCACCGCTGGTGTACTCAATGATTTCT 6622030 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || |||| || ||||| |||||||||| ||||| || || ||| |||| || Sbjct 6622029 GTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGATGGTTGCTCTTCCTGTTGCAG 6621970 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 | || ||||||||||| |||||||| || || ||||| ||||||| | || || | | Sbjct 6621969 GAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTCCGTCTGGGACTCAATGATGGCGTGC 6621910 Query 116611 CATA-CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTA 116669 || | | | | | || || || || | || || || | ||| || ||||| Sbjct 6621909 CAAAGCTGCTGAGCCTTCACCACACGC-TTCACCCGGCCTTCTTTCTCATATGAGGTGTA 6621851 Query 116670 GAGGGCCTCAAACTCTTCACCCACAGC-CTCTGAGAGCCCTGGTGCCTT-ATCTGGACAG 116727 ||| ||| ||||| || ||| |||| ||| ||||| || || || | |||||| Sbjct 6621850 GAGCTTCTCGAACTCCTC-CCCCCAGCACTCGTCCAGCCC-GGGGCATTCGTTTGGACAC 6621793 Query 116728 AAGAGAGACCATTGACCACCCT--CCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGA 116785 | |||||||| | || | | ||| |||| ||||||||| ||||| |||||||| | Sbjct 6621792 ATCAGAGACCA--GTCCTCGTTGGTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACA 6621735 Query 116786 GCGCCGAGAAGAGATC 116801 | || ||||||| || Sbjct 6621734 GGGCGTAGAAGAGGTC 6621719 >seq390 Length=2268 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 2044 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1985 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| |||||||| ||||||| Sbjct 1984 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1925 Query 127659 C 127659 | Sbjct 1924 C 1924 >seq73 Length=1910340 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1745250 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1745309 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| |||||||| ||||||| Sbjct 1745310 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1745369 Query 127659 C 127659 | Sbjct 1745370 C 1745370 Score = 87.8 bits (96), Expect = 2e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 127539 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 127598 |||| || | | |||||| || || |||||| ||| || ||||| || || | ||||| Sbjct 1749142 CCTCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCT 1749201 Query 127599 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 127658 ||| |||||| || ||| || || |||||||||||||| |||||||| ||||||| Sbjct 1749202 TCAGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCACGGCGGCGAACG 1749261 Query 127659 C 127659 | Sbjct 1749262 C 1749262 >seq18 Length=14161719 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || |||||| | ||||| | ||||| |||||||||| |||| ||| ||||| |||||| Sbjct 3644596 TAAATGTTGCTGGTGTAGGCCTCAACTGACTCATTGTTCCCCAGGATGTGGGCAGTGGAG 3644655 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTT 115994 || ||||||||||| |||| || || ||||| Sbjct 3644656 GCCGTGGGCATGGGGGCCAACAGCAGACTGTT 3644687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613464622600320