Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq2 143 4e-29 seq18 116 6e-21 seq5 93.3 7e-14 >seq2 Length=17630497 Score = 143 bits (158), Expect = 4e-29 Identities = 358/531 (67%), Gaps = 22/531 (4%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| | ||| || ||||||| ||| | || ||| | |||| | ||| ||||| Sbjct 6622042 CTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGATGGTTGCT 6621983 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGATCG 205002 ||| | ||| |||||||| ||||| | |||| | ||| | || | ||| |||| || Sbjct 6621982 CTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTTTCCGTCTGGGA--- 6621926 Query 205003 CAGAATG-TGG-GTCCACAATTCGC-GAGCCT---CCACTTGCTTCACGTACATCCCTTG 205056 | |||| ||| || | || || |||||| |||| ||||||| | |||| Sbjct 6621925 CTCAATGATGGCGTGCCAAAGCTGCTGAGCCTTCACCACACGCTTCAC---CCGGCCTTC 6621869 Query 205057 AGACTCGTATTTTGTGTACAGCGCCACAAAGTCAGAACC---GTACACGTCCATCAGCCC 205113 ||| ||| ||||| ||| | | || || || | || |||||| |||| Sbjct 6621868 TTTCTCATATGAGGTGTAGAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCCA---GCCC 6621812 Query 205114 TGGACATTTTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAA 205172 || |||| || ||||||||||||||||| || | | ||| | |||||||| ||| | Sbjct 6621811 GGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTC-TCCACCCTCTTCATGA 6621753 Query 205173 ACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAA 205232 |||||||| |||||||||| |||| || || || | |||||| | || | ||| Sbjct 6621752 ACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTTCCTG 6621693 Query 205233 GGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTAACCACACG 205291 ||| || |||| ||||| ||| | | | || |||||| ||||| || ||| | Sbjct 6621692 TGTTTTTCTTCAGCTCCAG-GAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTACATG 6621634 Query 205292 GCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAA 205351 || | || || ||||||||||| || |||||||| || || | | | |||| | Sbjct 6621633 GCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTGTAC 6621574 Query 205352 ACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATG 205402 |||| |||||| || || ||||| |||| | | ||||| |||| | |||| Sbjct 6621573 ACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGATG 6621523 Score = 143 bits (158), Expect = 4e-29 Identities = 239/343 (70%), Gaps = 2/343 (1%) Strand=Plus/Minus Query 204178 CAGGTGGGGGTTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTT 204237 ||| ||||| || | ||||| || |||||||| || |||| |||||| | | |||| | Sbjct 6622663 CAGATGGGGATTCACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCT 6622604 Query 204238 GGTGAATGGTTCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCAT 204297 |||| | | ||| | | |||||||||||| | ||||| |||||| ||| |||||||| Sbjct 6622603 GGTGTAGGCTTCAATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCAT 6622544 Query 204298 GGGAGCCAGGAGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGT 204357 || ||||| ||||| ||| | ||| |||| || || | | ||| || | Sbjct 6622543 CGGGGCCAGCAGCAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTT 6622484 Query 204358 CCAGTCGTGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACT 204417 |||||| || | |||| || ||||||||||| |||| | |||||| | || Sbjct 6622483 CCAGTCCCACAGCTTGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCT 6622424 Query 204418 GACTGGGCTGCCCTTGTACGTCGGATA-AGGCTGATCCTCTTCTGCCAGCTTGCACGAGG 204476 ||| ||| ||| | ||| ||| || ||| || ||| | ||||||| ||| | Sbjct 6622423 GACGGGGGAGCCTTCGTATGTCTCGTAGGGGCCGA-GCTCGGCGGCCAGCTCGCAGCTGC 6622365 Query 204477 CGGCCATGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTT 204519 | ||| |||| |||||| |||||||||||||| |||| ||| Sbjct 6622364 CCTCCAGGGCGGCATAGTAGATGGTCTCAAAGATTTGAATGTT 6622322 Score = 129 bits (142), Expect = 9e-25 Identities = 117/145 (81%), Gaps = 2/145 (1%) Strand=Plus/Minus Query 203917 CCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAATGTT 203976 ||| ||||| | ||||||| | |||||||| ||| || ||||| ||||||||||| Sbjct 6623380 CCAGCCGTAGAAGTGCATGCTGGTCAGTTTGCCATAGTTTGGCTCGGCGATGTGAATGTT 6623321 Query 203977 CAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGGTCT 204035 || |||||||| ||||||||| |||||||| ||||| |||||||| ||||||| |||| Sbjct 6623320 CATGGACTGGCTCTGGTCGATG-AAGGCGCCACGATCAGCGGCCATCTTGATAACAGTCT 6623262 Query 204036 TCTGCGAAATCTCCCACACCGTCTT 204060 |||| || || |||||||| || || Sbjct 6623261 TCTGGGAGATTTCCCACACGGTTTT 6623237 >seq18 Length=14161719 Score = 116 bits (128), Expect = 6e-21 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 203914 CTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAAT 203973 || ||| ||||| | ||||||| | |||||||| ||| || || || ||||| || Sbjct 3643268 CTTCCAACCGTAGAAGTGCATGCTGGTCAGTTTGCCGTAGTTTGGCTCAGCAATGTGGAT 3643327 Query 203974 GTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGGCCATATTGATAATGG 204032 |||||| |||||||| || || ||| | |||||| || ||||| ||||| |||| |||| Sbjct 3643328 GTTCAGGGACTGGCTCTGATCAATGTA-GGCGCCACGGTCTGCTGCCATCTTGAGGATGG 3643386 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTT 204060 ||||||| || ||||||||||| ||||| Sbjct 3643387 TCTTCTGAGAGATCTCCCACACAGTCTT 3643414 >seq5 Length=21819443 Score = 93.3 bits (102), Expect = 7e-14 Identities = 87/111 (78%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 200181 TTTTGTTTACAGACTGGTTCCGGAGTACATGGACCCTGCAGGATGACCCTTGTAAAAAAT 200240 |||| || |||| |||||| | || || | ||| || || |||||||||||||| || | Sbjct 9397033 TTTTTCTTGCAGAATGGTTCAGAAGCACCTTGACTCTTCAAGATGACCCTTGTAAGAAGT 9396974 Query 200241 ATCACGAAGTGCTCATTATCAACCCCGTTCTATTAGTCCCTCCAACCAAGG 200291 || |||||| |||| || |||||||| |||| | || |||||||| |||| Sbjct 9396973 ATTACGAAGGGCTCTTTGTCAACCCCCTTCTGCTGGTACCTCCAACTAAGG 9396923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795100016229120