Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq699 161 8e-35 seq10 89.7 4e-13 >seq699 Length=1473 Score = 161 bits (178), Expect = 8e-35 Identities = 133/162 (82%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||| ||| || |||||||| |||||||| | ||||||||||| || || ||| Sbjct 314 AGACCTGTGATGTGTGCGATCATGTAGGTGAGGAGTGCATAGCTGGCGATATTGAAAGGT 373 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || ||||| ||||| || ||||||| |||||| |||||||| || ||||| ||||| ||| Sbjct 374 ACTCCGAGGCCCATATCGCCCGACCGCTGGTACAGCTGACATGACAGCTCGCCGTCACTC 433 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATG 30030 ||||| |||||||||| || ||| || || || ||||||||| Sbjct 434 ACGTAGAACTGACACAGGGCGTGACAGGGCGGCAGAGCCATG 475 Score = 118 bits (130), Expect = 9e-22 Identities = 127/168 (76%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||||| | ||| || || ||||| |||||||||||||| || ||||| ||||||||||| Sbjct 1279 CATGTTTGCGTAGTCGGCACCGAAGTGCCTCCACTGGAAACCATACACAGGTCCCAGGTC 1338 Query 30210 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30269 || || || |||| | |||||| ||||||| || || | || || || || || Sbjct 1339 CCCTTCCTCTCTGTCTTTGAAGCCAAGGTTGTCCAGGAACTCCCGTGACCCATTTGCTTC 1398 Query 30270 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 ||| ||||| ||||| ||||| | |||||| |||| ||||| || || Sbjct 1399 CCAAATCTTCACCCCTTTCTCTGTGAGCTCCTTGGCATTTGTTGATCC 1446 >seq10 Length=24626513 Score = 89.7 bits (98), Expect = 4e-13 Identities = 72/87 (83%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 112261 AGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATGTCTGGACACACG 112320 ||||| |||| ||||| |||| |||||| || ||||||| |||| ||| ||||||||| Sbjct 78920 AGTCTGACAGGGTGCCAAGGCAAATCTCCATTCCTCCCGATTCCCAGGTCGGGACACACG 78979 Query 112321 GCCACGATACCGTTCAGAATGAGGGGC 112347 ||||||||||| ||||||| ||||| Sbjct 78980 GCCACGATACCATTCAGAACCTGGGGC 79006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408589950890096