Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 132 4e-26 seq33 102 6e-17 >seq3 Length=24902066 Score = 132 bits (146), Expect = 4e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | ||| ||||| |||||||| || || ||||| || | | Sbjct 14701295 CCTCCTCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 14701354 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | |||| | |||| |||| |||||||| ||||| |||| | ||| || || || ||| Sbjct 14701355 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 14701414 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || ||| ||| | || ||||||||| | || || Sbjct 14701415 ATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACC 14701474 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || ||||| || | || || ||||| ||||||||| Sbjct 14701475 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATG 14701522 Score = 120 bits (132), Expect = 2e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| || ||||| || || ||||| || | | Sbjct 14702779 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 14702838 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| |||| | ||| || || || ||| Sbjct 14702839 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702898 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | |||||| | ||| || Sbjct 14702899 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACC 14702958 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| |||| |||||||| || | ||||| ||||| |||||||||||| Sbjct 14702959 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCATGGTT 14703009 Score = 118 bits (130), Expect = 8e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || | ||||||||| ||||||||||| || |||||||| | | Sbjct 14702551 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702610 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| |||| | ||| || || || ||| Sbjct 14702611 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 14702670 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 ||||||||||| || || || || || ||| | || | |||||| | || || Sbjct 14702671 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACC 14702730 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 ||||| || | |||||||| || | || || || || ||||||||| Sbjct 14702731 TCAAGGGTAATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCATG 14702778 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| || || | ||||||||| ||||||||||| || |||||||| | | Sbjct 14702323 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702382 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || ||||| |||| | ||| || || || ||| Sbjct 14702383 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702442 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || || | || |||||||| | || || Sbjct 14702443 ATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTCTCCACAGTGTCGCTGGGCTCTACC 14702502 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||||||||| || ||||| || | || || || || || |||||| Sbjct 14702503 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATTTGCATG 14702550 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 |||||||| | ||| | || | ||| ||||| |||||||| || || || || |||| | Sbjct 14701067 CCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAG 14701126 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | |||| |||| ||||| || ||||| |||| | ||| || || || ||| Sbjct 14701127 AGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGGA 14701186 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 |||||||| || || || || || || ||| | || | |||||| | || || Sbjct 14701187 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACC 14701246 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || || | || ||||| || | || || ||||| ||||||||| Sbjct 14701247 TCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATG 14701294 >seq33 Length=5647056 Score = 102 bits (112), Expect = 6e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 || || || | ||| | || | ||| ||||| ||||| || || || ||||| || | | Sbjct 11793 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 11734 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| |||| ||||| || ||||| |||| | ||| || || || || Sbjct 11733 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 11674 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || || || || || || ||| |||| | |||||| | || || Sbjct 11673 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 11614 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGTT 101473 ||||| |||| || ||||| || | || || ||||| |||||||||||| Sbjct 11613 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATGGTT 11563 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396251585822064