Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 100 6e-16 seq33 87.8 4e-12 >seq3 Length=24902066 Score = 100 bits (110), Expect = 6e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||| ||||| | || | ||| | || | ||||| ||| || || ||| Sbjct 14701292 ATGCCTCCTCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCA 14701351 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| |||| || |||||||||||||| | ||||| || |||||| Sbjct 14701352 GAGAGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGT 14701411 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || |||| ||||| | || || | || Sbjct 14701412 GGAATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701471 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 14701472 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701521 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| | || | ||||| ||| ||||| || Sbjct 14701520 ATGCCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701579 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | ||||| ||||||||||| | ||||| |||||||| Sbjct 14701580 GAGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 14701639 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || |||| ||||| | || || | || Sbjct 14701640 GGGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701699 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 14701700 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701749 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || | ||| | || | ||||| ||| ||||| || Sbjct 14701748 ATGCCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701807 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | ||||| |||| || | ||||| ||||||||||| | ||||| |||||||| Sbjct 14701808 GAGAGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGA 14701867 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || |||| ||||| | || || | || Sbjct 14701868 GGGATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCA 14701927 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || ||||| || ||||| | || || | ||| |||||||| Sbjct 14701928 ACCTCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701977 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || ||||||||||| | || | ||| | || | ||||| ||| ||||| || Sbjct 14701064 ATGCCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCG 14701123 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 || | || || |||| |||| || || ||||||||||| | |||||| || ||||| Sbjct 14701124 GAGAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGA 14701183 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || ||||| || | || | || Sbjct 14701184 GGAATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCA 14701243 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| |||||||| || || || | || || | ||| |||||||| Sbjct 14701244 ACCTCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCAT 14701293 >seq33 Length=5647056 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| || ||||| | || | ||| | || | || || ||| ||||| ||||| Sbjct 12250 ACCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGA 12191 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 | || || |||| ||||| || || ||||||||||| | ||||| |||||||| || Sbjct 12190 GAGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGG 12131 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || || || || || || || || || ||||| || | || | || || Sbjct 12130 GATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAAC 12071 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| ||||| || ||||| | || |||| ||| |||||||| Sbjct 12070 CTCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 12023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984409969015200