Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq6 95.1 1e-14 seq33 89.7 5e-13 seq18 89.7 5e-13 >seq3 Length=24902066 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || ||||| || || || || |||||||| ||||| |||||||| || Sbjct 14702323 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702382 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 14702383 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702442 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || |||| |||||| | || || Sbjct 14702443 ATGCCTTCCTTGTCCTGGATCTTGGTCTTCACGTTCTCCACAGTGTCGCTGGGCTCTACC 14702502 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || || |||||||||||||| Sbjct 14702503 TCAAGAGTGATGGTCTTGCCTGTGAGGGTCTTGACGAAAATTTGCAT 14702549 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || ||||| || || || || |||||||| ||||| |||||||| || Sbjct 14702551 CCCCCCCTCAGACGCAAGACAAGATGAAGGGTGGATTCTTTTTGGATGTTGTAATCAGAG 14702610 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 14702611 AGGGTGCGGCCATCTTCAAGCTGCTTTCCGGCAAAGATCAGCCTCTGCTGGTCAGGAGGA 14702670 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || ||| | ||||| | || || Sbjct 14702671 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAACC 14702730 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || ||||||||||| || || | || || ||||| || ||||| Sbjct 14702731 TCAAGGGTAATGGTTTTGCCTGTGAGGGTCTTGACGAAGATCTGCAT 14702777 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||| || || || ||||||||||| Sbjct 14702779 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGACTCTTTCTGGATGTTGTAGTCAGAG 14702838 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| | |||||| || || || Sbjct 14702839 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGA 14702898 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||||||||| || || || || || || ||| | ||||| | ||| || Sbjct 14702899 ATGCCTTCTTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCACTGGGTTCAACC 14702958 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || |||||||| || || | ||||| || || || ||||| Sbjct 14702959 TCAAGGGTGATGGTTTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 14703005 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || |||||||| || || ||||| |||||| Sbjct 14701979 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAG 14702038 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| | ||||||||| || || Sbjct 14702039 AGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGG 14702098 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || || || || | |||||| | || || Sbjct 14702099 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAACTGTGTCACTAGCCTCAACC 14702158 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || |||||||| Sbjct 14702159 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATTTGCAT 14702205 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||||||| |||| || || || || |||||||| || || ||||||||||| Sbjct 14701295 CCTCCTCTGAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 14701354 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||| || || ||||| |||| | |||||| || || || Sbjct 14701355 AGGGTTCGGCCATCTTCCAGCTGCTTACCAGCAAAGATCAGCCTCTGCTGGTCAGGTGGA 14701414 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 14701415 ATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACC 14701474 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 14701475 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701521 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || |||||||| || || ||||| |||||| Sbjct 14701523 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAG 14701582 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| | ||||||||| || || Sbjct 14701583 AGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGG 14701642 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 14701643 ATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACC 14701702 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 14701703 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701749 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || |||||||| || || ||||| |||||| Sbjct 14701751 CCGCCCCTCAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGAG 14701810 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | || || ||||||||||| ||||| |||| | ||||||||| || || Sbjct 14701811 AGGGTTCGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGG 14701870 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 |||||||| || || || || || ||| || || | ||||| | || || Sbjct 14701871 ATGCCTTCCTTGTCCTGGATCTTGGTTTTCACATTCTCAACAGTGTCACTGGCCTCAACC 14701930 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || || || || ||||| Sbjct 14701931 TCTAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 14701977 >seq6 Length=17716291 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 134484 TTTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCG 134543 || || ||||| || || | ||| ||||| || ||||| ||||| || ||||||||||| Sbjct 10619601 TTACCCCCTCTCAGACGAAGCACAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 10619660 Query 134544 CCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGC 134603 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || | Sbjct 10619661 GAGAGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGG 10619720 Query 134604 GGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCC 134663 || ||||| || || || || || || || || || | || ||| | ||| Sbjct 10619721 GGGATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCC 10619780 Query 134664 ACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || || ||||| || || || | || || ||||| || ||||| Sbjct 10619781 ACCTCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10619830 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | | | ||||| || ||||| ||||| || ||||||||||| Sbjct 10619832 CCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10619891 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || | || Sbjct 10619892 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10619951 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | || ||| | ||||| Sbjct 10619952 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10620011 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 10620012 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620058 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | | | ||||| || ||||| ||||| || ||||||||||| Sbjct 10620060 CCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10620119 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || | || Sbjct 10620120 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10620179 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | || ||| | ||||| Sbjct 10620180 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10620239 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 10620240 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620286 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | | | ||||| || ||||| ||||| || ||||||||||| Sbjct 10620288 CCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10620347 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || | || Sbjct 10620348 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10620407 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | || ||| | ||||| Sbjct 10620408 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10620467 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || || ||||| || || || | || || ||||| || ||||| Sbjct 10620468 TCCAGGGTGATGGTCTTGCCAGTCAGCGTCTTGACGAAGATCTGCAT 10620514 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || ||||| || || | | | ||||| || ||||| ||||| || ||||||||||| Sbjct 10620516 CCCCCTCTCAGACGGAGCGCAAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAG 10620575 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || ||||| ||||| ||||| |||| ||||||||| || | || Sbjct 10620576 AGGGTGCGGCCATCTTCAAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCTAGGGGG 10620635 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || || || || || || || | || ||| | ||||| Sbjct 10620636 ATGCCCTCCTTATCCTGGATCTTGGCCTTCACGTTCTCAATGGTCTCGCTTGGCTCCACC 10620695 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || || || || ||||| ||| Sbjct 10620696 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATCTTG 10620746 >seq33 Length=5647056 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || || || |||| || || || || ||||||||||| || ||||| ||||| Sbjct 12249 CCACCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTATAGTCAGAG 12190 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | || || | ||| ||||| ||||| |||| | ||||||||| ||||| Sbjct 12189 AGGGTGCGGCCATCTTCCAACTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGGG 12130 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 ||||| || || || ||||| || || || || | ||||| | || || Sbjct 12129 ATGCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATGGTGTCACTGGGCTCAACC 12070 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || ||||| ||||| || || || | || ||||| || || ||||| Sbjct 12069 TCCAGAGTGATGGTCTTGCCAGTCAGGGTCTTAACAAAGATCTGCAT 12023 >seq18 Length=14161719 Score = 89.7 bits (98), Expect = 5e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 8232 CGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTGTACAAAGACGCTTG 8291 |||| | ||||||| ||||| ||||| || | |||||||| || ||||| ||||| || Sbjct 3645680 CGCCGTCATCGAATCTCAAACAGAAACGGGCACACCGTACATACTCTACAAGGACGCCTG 3645621 Query 8292 CAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGCAATCTGTGCGCTGA 8351 |||| || || || || ||| |||||||||| | ||||||||||||| | || Sbjct 3645620 CAACAGGAAGAGTAACCAGCAGAACCTGGGCACCATCAAATCCAGCAATCTGTGCACGGA 3645561 Query 8352 AATTGTACAGTACA 8365 || ||| |||||| Sbjct 3645560 GATAGTAGAGTACA 3645547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505363325351040