Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2 228 1e-54 seq18 86.0 8e-12 >seq2 Length=17630497 Score = 228 bits (252), Expect = 1e-54 Identities = 672/1016 (66%), Gaps = 35/1016 (3%) Strand=Plus/Minus Query 110610 GATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGCTTGT 110669 ||| ||||||||| | | ||| || || ||| | | ||||| |||| || || | Sbjct 6622712 GATTCTTCATATCTTCGTTCCACAGCCCTCTCTCCGTCAGGTCTTTGAGCAGATGGGGAT 6622653 Query 110670 TGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTATGGTT 110729 | || || ||||| || | |||| || | ||||||||| | ||||| | || Sbjct 6622652 TCACTATCTGGAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTT 6622593 Query 110730 CAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCCATCA 110789 ||| | | || || || |||| ||| || ||||||||||| || ||||| || |||| || Sbjct 6622592 CAATGGACTCGTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCA 6622533 Query 110790 AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCCTTGAGAACATCCCAGTCGTAGT 110849 |||||||| | | || | || ||| ||||||||| | | |||||| | Sbjct 6622532 GCAGACTGTTCCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCAC- 6622474 Query 110850 TGAGCTTGGTTT-CACCTTC--CCACATGTCAAACTGAAGCAC-CCCTTGG-GACGCGGG 110904 |||||||| | |||| ||||||||| |||| || | |||||| |||| ||| Sbjct 6622473 --AGCTTGGTGGGCGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACGGGGG 6622416 Query 110905 AGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCCTCCAG 110964 || || || | || || |||| || | | | |||| || ||||| ||||||| Sbjct 6622415 AG--CCTTCGTATGTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTCCAG 6622358 Query 110965 GGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCTGAATC 111024 || || | || ||||| |||||||| || |||| | || || ||| || Sbjct 6622357 GGCGGCATAGTAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTTTC 6622298 Query 111025 AAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAAACCAATAGG 111084 ||||||| || | || || || || | |||||| ||||| | || || || Sbjct 6622297 GAATGCGTGACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGG 6622238 Query 111085 TCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---ACGGGATAAAAATTTCTGTCAAT 111141 | ||| ||| | || ||||| | | | |||| || || || || || | || || Sbjct 6622237 CCGGTGACGCTTGTTGGACTT---CTCTGCCTCAGGCACTGGGTAGAAGTTAATATCTAT 6622181 Query 111142 GACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGA---AGTTTTTCATAATC 111198 || ||| | ||||||| ||||| | || | ||| | ||||||| | | || Sbjct 6622180 GATCTTGTTCAAATTTTTG---ACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTC 6622124 Query 111199 AAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAAC 111258 |||||| || |||| |||||||| | || |||||||| |||| ||| || || Sbjct 6622123 AAAAGTCCG---CTCTGGGGTGACATACATGTTGAGTGCGATTGAGGCCAGATTACAGAC 6622067 Query 111259 AGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAAT 111318 || ||| || |||||||| | |||||||| || | |||| ||||| || Sbjct 6622066 GGCGACCTCGTCACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGAT 6622007 Query 111319 CGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGG 111378 || |||| |||| ||||| |||||| ||||||| | || |||||||||||||| || Sbjct 6622006 GGTGCCCAGGTTCTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGG 6621947 Query 111379 CGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGCGGCTGGTACAA 111437 ||| || || |||||||| || | | || || | ||||| | | | | || || Sbjct 6621946 CGTGCCAGTTTCCGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCTGAGCCTTCACCAC 6621887 Query 111438 TGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCA 111497 || || |||| || || ||| || |||||||| || |||||||| ||| Sbjct 6621886 ACGC-TTCACCCGGCCTTCTTTCTCATATGAGGTGTAGAGCTTCTCGAACTCCTC-CCCC 6621829 Query 111498 CCGC-GTCGGAGAGACCTGGTGCCTT-GTCTGGACAGAAAAGAGACCATTGACCACCTT- 111554 | || ||| || || || || || || |||||| | |||||||| | || | || Sbjct 6621828 CAGCACTCGTCCAG-CCCGGGGCATTCGTTTGGACACATCAGAGACCA--GTCCTCGTTG 6621772 Query 111555 -CCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCT 111609 ||| |||| ||||||||| ||||| || |||||||||| | ||||| ||||| Sbjct 6621771 GTCTCCACCCTCTTCATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCT 6621716 >seq18 Length=14161719 Score = 86.0 bits (94), Expect = 8e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 111265 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCC 111324 |||||| || ||||||||||| || || || || | ||| || || || || Sbjct 3645533 CTCATCTTTGCTTGTGTACTCTACTATCTCCGTGCACAGATTGCTGGATTTGATGGTGCC 3645592 Query 111325 CAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 111384 || |||| |||||||||||| ||||||| || ||||||||||| ||||| || || || Sbjct 3645593 CAGGTTCTGCTGGTTACTCTTCCTGTTGCAGGCGTCCTTGTAGAGTATGTACGGTGTGCC 3645652 Query 111385 CGTCTCCGTCTGTGATTTGA 111404 ||| || || || |||| || Sbjct 3645653 CGTTTCTGTTTGAGATTCGA 3645672 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988414579200