Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq2 284 1e-71 seq390 102 9e-17 seq73 102 9e-17 seq4 86.0 7e-12 seq18 84.2 2e-11 >seq2 Length=17630497 Score = 284 bits (314), Expect = 1e-71 Identities = 841/1281 (66%), Gaps = 53/1281 (4%) Strand=Plus/Minus Query 78507 GAACTCGCCGGCCAGGGTCCGGCGCAGGTAGATGTTGGTCGTGTACGGCTCGAAAGCCTC 78566 |||||| |||| ||| || ||| |||||||||| | ||||| | || | | ||| Sbjct 6622642 GAACTCTCCGGAGAGGACCCTGCGGGTGTAGATGTTGCTGGTGTAGGCTTCAATGGACTC 6622583 Query 78567 GTTGTTCCCCATGATCTGGGCGGTCGAGGCGGTCGGCATGGGTGCGACCAGTAGAGAATT 78626 |||||| |||| |||||||||||| |||||||| ||||| || || | ||| ||| || Sbjct 6622582 GTTGTTGCCCAGGATCTGGGCGGTGGAGGCGGTGGGCATCGGGGCCAGCAGCAGACTGTT 6622523 Query 78627 CCGAAGACCATGCGTCTTGATCTCGACCTTTAGG------CCGTCCCAAAATTCATTCGC 78680 || | || ||| | ||||| |||| || | |||||| | | | | Sbjct 6622522 CCTCACCCCGTGCTTGGCGATCTTTTCCTTGAGCAGCTTCCAGTCCCACAGCTTGGTGGG 6622463 Query 78681 CGCGATCCCCCACATGTCCGGTTGAAGGATACCCTCG--GACGCCGGCGACCCCTTGAAC 78738 || || |||||||||| || ||||| |||| | |||| || || || | | | Sbjct 6622462 CGTCTTCTCCCACATGTCGTACTGGAGGATGCCCTTGCTGACG--GGGGAGCCTTCGTAT 6622405 Query 78739 GTCTCGTAAGATCCCTCCTCCTTGGCGAGTTCGCA--TGAC-TCGAGCAGGGCCGCGTGG 78795 |||||||| | || ||| ||| || ||||| || | || |||||| || | | Sbjct 6622404 GTCTCGTAGGGGCCGAGCTCGGCGGCCAGCTCGCAGCTGCCCTC---CAGGGCGGCATAG 6622348 Query 78796 TACACAGCCTCGAAGATGCCCTTGTTGAGCTCGCGCGCCTT-GGTCTCGTCGAACGAAAG 78854 || | | ||| ||||| |||| ||| |||||| || || ||||| | | Sbjct 6622347 TAGATGGTCTCAAAGATTTGAATGTTCAGCAGCTGCGCCTCAGGGCTT-TCGAATGCGTG 6622289 Query 78855 GCCGAGCATCATGAAGACATCGGCCAGGCCCTGGACGCCGATAGCGATCGGTCGGTGGCG 78914 | | | |||||| || |||| || ||||| ||||| | || || ||||| || Sbjct 6622288 ACGCATGAGGATGAAGGTGTCTGCCAAACCTTGGACACCGATTCCTATTGGCCGGTGACG 6622229 Query 78915 CATGTTGCTCTTTCGGGCCGCCTCGGTC---GGGTAAAAGTTCCGATCGATGACGCGGTT 78971 | ||||| ||| | ||||| | | ||||| ||||| ||| |||| ||| Sbjct 6622228 CTTGTTGGACTTCT---CTGCCTCAGGCACTGGGTAGAAGTTAATATCTATGATCTTGTT 6622172 Query 78972 CAGGTTACGCGTGACGA---CCCGAGTCACCTCGTACAATTTGGCGAAATCAAAATGATT 79028 || || |||| | | ||||| | | ||| || |||||| Sbjct 6622171 CAAATTTT---TGACAATTACTTTGGTCACATAAGCTAGTTTTTTAAAGTCAAAAGTCCG 6622115 Query 79029 TCCTTTGATGAAAGTCG-GTAGGCACAGCGAT----GCCAGGTTGCACACGGCCGTCTCG 79083 || | ||| | | || | | ||||| ||||| || || ||||| |||| Sbjct 6622114 CTCTGGGGTGACATACATGTTG--AGTGCGATTGAGGCCAGATTACAGACGGCGACCTCG 6622057 Query 79084 TCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATG 79143 || ||| | ||| |||||||||||||||| || |||||||||||| | | Sbjct 6622056 TCACCGCTGGTGTACTCAATGATTTCTGTGCACAGGTTGCTGCTCTTGATGGTGCCCAGG 6621997 Query 79144 TTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTC 79203 |||| |||||||||||| ||| |||| ||| |||||| |||||| ||||| || || Sbjct 6621996 TTCTGATGGTTGCTCTTCCTGTTGCAGGAGTCTTTGTAGAGCATGTATGGCGTGCCAGTT 6621937 Query 79204 TCAACCTGACTCTTGAGAACGCCGTCCCAGATGTCCCGGGCCCGGACAACCTTCTTGTAC 79263 || ||| || | | | ||| ||| | | | | ||| || || ||| | Sbjct 6621936 TCCGTCTGGGACTCAATGATGGCGTGCCAAAGCTGCTGAGCCTTCACCACACGCTTCACC 6621877 Query 79264 CGACCCTGTGCGACGTACGTCCGGTACAACTCGTTGAAAGCCTCCCCATAGACATCGGGC 79323 || || | | | || | ||| | || | ||| ||||||| || ||| | Sbjct 6621876 CGGCCTTCTTTCTCATATGAGGTGTAGAGCTTCTCGAACTCCTCCCCCCAGCACTCGTCC 6621817 Query 79324 AGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCTCGTCCTTCTCAACCTTCTCC 79383 || || ||||| |||| || |||||||| ||||||||||| |||| ||| ||| | Sbjct 6621816 AGCCCGGGGCATTCGTTTGGACACATCAGAGACCAGTCCTCGTTGGTCTCCACCCTCTTC 6621757 Query 79384 ATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGCGGCAACGCATCTCCTCGTCG 79443 ||||| ||||| |||||||||||||| ||||||||| | | | | |||||| | Sbjct 6621756 ATGAACAGGTCGGGGATCCACAGGGCGTAGAAGAGGTCTCTGGCCCTCTGCTCCTCCTTT 6621697 Query 79444 CCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCGGCGTGCCACGGCTCCAGATAG 79503 || ||| |||||| || ||||| | | || |||||| ||||||| || Sbjct 6621696 CCTGTGTTTTTCTTCAGCTCCAGGAAGTCAAACACATCAAAGTGCCAGGGCTCCAAGTAC 6621637 Query 79504 ATGGCGAACGAACCCTTGCGCTTGCCGCCGCCCTGGTTGACGTACCGGGCCGTGTTGTTG 79563 |||||||| | || | |||| ||||||||||| ||||||||| |||||||||||| Sbjct 6621636 ATGGCGAAAGCTCCGGGCCTCTTGTTGCCGCCCTGGTCGACGTACCGCGCCGTGTTGTTG 6621577 Query 79564 AAAACTCGGAGCATGGGCACGATGCCGTCGGCGACGCCGTTCGTCCCGTTGATTCGTGTA 79623 | |||| |||||||| || | || | || | |||||| || ||| || |||| Sbjct 6621576 TACACTCTCAGCATGGGGACTAGACCATTGGAGTTGCCGTTGGTGCCGGCGA----TGTA 6621521 Query 79624 CCGCTCGCCCGAATGTTCG--AGCAGTGGATT------CCGATGCCCCCGGACCACTTGG 79675 ||| ||| || ||| |||| || | ||||| || |||| | |||||| Sbjct 6621520 --GCT--CCCTGTTGATCGGATGCAGCTGACTGCCACGCCGATTCCTCCGGCCGACTTGG 6621465 Query 79676 AGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCTCGATCGAGTCGTCCTTCATAG 79735 ||||| | ||||||| ||| || || ||||| || |||||||| |||||| ||||| | Sbjct 6621464 AGATGAGGGCGCACTGCTTCAGTGTATCGTAAATCCCCTCGATGCTGTCGTCTTTCATGG 6621405 Query 79736 CGACCAGGAAGCAGCTCGACA 79756 ||| |||||||||||| |||| Sbjct 6621404 CGAGCAGGAAGCAGCTGGACA 6621384 Score = 237 bits (262), Expect = 2e-57 Identities = 812/1247 (65%), Gaps = 39/1247 (3%) Strand=Plus/Plus Query 19248 TGTCGAGCTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGC 19307 |||| ||||| ||||| | || ||||| || |||||||| ||||| || ||||| || | Sbjct 6621384 TGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAGGGGATTTACGATACAC 6621443 Query 19308 TCAAGGAGTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATC-CACT--GCTCGA 19364 | ||| ||||||| | ||||||||||| | |||| || ||||| | || | ||| | Sbjct 6621444 TGAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGAGGAATCGGCGTGGCAGTCAGCTGCA 6621503 Query 19365 ATATCCGGTCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCC 19424 |||| || | || | ||| || || ||||| || | ||| | |||| Sbjct 6621504 ---TCCGATCAACAGGGAGCTACATCGCCGGCACCAACGGCAACTCCAATGGTCTAGTCC 6621560 Query 19425 CAATGCTCCGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAA-ACGC 19483 | ||||| | || | |||||||||||| |||||||| ||||||| ||| ||| | || Sbjct 6621561 CCATGCTGAGAGTGTACAACAACACGGCGCGGTACGTCGACCAGGGCGGCAACAAGAGGC 6621620 Query 19484 AAGG-GCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGA 19542 || ||| |||||||| ||| | ||||| |||||| || || | || ||||| || Sbjct 6621621 CCGGAGCT--TTCGCCATGTACTTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGA 6621678 Query 19543 ACTGCGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTG 19602 ||| ||| || | |||||| | | | ||||||||| ||| |||| Sbjct 6621679 GCTGAAGAAAAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTCTTCTACGCCCTGTG 6621738 Query 19603 GATTCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCC 19662 ||| || ||||| |||||| ||| ||| |||| |||| || ||| |||||||| || Sbjct 6621739 GATCCCCGACCTGTTCATGAAGAGGGTGGAGACCAACGAGGACTGGTCTCTGATGTGTCC 6621798 Query 19663 GCACGAATGCCCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGAC 19722 |||||||||| || || ||| || || |||| |||| | || | ||| | Sbjct 6621799 AAACGAATGCCCCGGGCTGGACGAGTGCTGGGGGGAGGAGTTCGAGAAGCTCTACACCTC 6621858 Query 19723 TTACGTAGCCCAGGGCCGGTTCAAGAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGT 19782 || | | |||||| | ||| ||||| ||| | | | | ||| || | | Sbjct 6621859 ATATGAGAAAGAAGGCCGGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTTTGGCACGCCAT 6621918 Query 19783 CCTCAAAAGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGC 19842 | | | |||| || || ||||| || |||||| |||||| ||| || ||| Sbjct 6621919 CATTGAGTCCCAGACGGAAACTGGCACGCCATACATGCTCTACAAAGACTCCTGCAACAG 6621978 Query 19843 CAAGTCAAATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCAT 19902 ||| || || ||||| | ||| | |||||| ||||||||| || |||||||| Sbjct 6621979 GAAGAGCAACCATCAGAACCTGGGCACCATCAAGAGCAGCAACCTGTGCACAGAAATCAT 6622038 Query 19903 GGAGGTTTCCAAGCCG-GACGAGACTGCCGTGTGTAATCTGGCGTCCCTGTGCCTGCCGA 19961 || || | ||| | |||||| ||||| ||||||||||| || | || | Sbjct 6622039 TGA-GTACACCAGCGGTGACGAGGTCGCCGTCTGTAATCTGGCCTCAATCGCACTCAACA 6622097 Query 19962 CTTTCGTCA----AG-GCCTCCTCCTTCGACTTTGCCAAATTGTACGAGGTGACCCGGG- 20015 | |||| || || || || |||||| ||| | | |||||| | Sbjct 6622098 TGTATGTCACCCCAGAGCGGACT--TTTGACTTTAAAAAACTAGCTTATGTGACCAAAGT 6622155 Query 20016 --TCGTCACGCGTAATCTGAATCGCGTCATCGATCGGAACTTTTACCC---GACCGAGGC 20070 | |||| ||| |||| |||| ||| ||||| ||||| | | ||||| Sbjct 6622156 AATTGTCA---AAAATTTGAACAAGATCATAGATATTAACTTCTACCCAGTGCCTGAGGC 6622212 Query 20071 GGCGCGCAAGTCGAATATGCGCCACCGGCCGATCGCGATCGGCGTCCAGGGCCTGGCCGA 20130 | | ||||| || | ||| |||||||| || | ||||| ||||| || |||| || Sbjct 6622213 AGAG---AAGTCCAACAAGCGTCACCGGCCAATAGGAATCGGTGTCCAAGGTTTGGCAGA 6622269 Query 20131 CGTTTTCATGATGCTCGGCCTCTCATTCGACGATCCCAAGGCGCGCGAGCTCAACAAGGG 20190 | ||||| | | | | | ||||||| || |||||| ||| |||| Sbjct 6622270 CACCTTCATCCTCATGCGTCACGCATTCGAAAGCCCTGAGGCGCAGCTGCTGAACATTCA 6622329 Query 20191 CATCTTCGAGGCCGTGTACCACGCGGCCCTCCTGGAATCGTGCGAACTCGCCAAAGAGGA 20250 ||||| ||| || | ||| | || ||||| || ||||| || ||| ||| Sbjct 6622330 AATCTTTGAGACCATCTACTATGCCGCCCTGGAGGGCAGCTGCGAGCTGGCCGCCGAGCT 6622389 Query 20251 CGGCCCGTACGAGACGTTCAAGGGGTCGCCCGCGTCCGAGGGTATCCTCCAGCCGGACAT 20310 |||||| |||||||| | | | || || |||| | |||| ||||||||| ||||| Sbjct 6622390 CGGCCCCTACGAGACATACGAAGGCTCCCCCGTCAGCAAGGGCATCCTCCAGTACGACAT 6622449 Query 20311 GTGG-----GGCG-TCACTGAG-AATGAGTTTTGGAGCGCCCTCAAGGTTGAGATCAAGA 20363 |||| | || ||| || || | | | ||| ||||||| ||||| | Sbjct 6622450 GTGGGAGAAGACGCCCACCAAGCTGTGGGACTGGAAGC-TGCTCAAGGAAAAGATCGCCA 6622508 Query 20364 CCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACCGCCCAGA 20423 |||||| | | ||| |||| | || || ||||| |||||||| |||||||||| Sbjct 6622509 AGCACGGGGTGAGGAACAGTCTGCTGCTGGCCCCGATGCCCACCGCCTCCACCGCCCAGA 6622568 Query 20424 TCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTAC 20470 || |||| ||||||||| | | || | ||||| | |||||||||| Sbjct 6622569 TCCTGGGCAACAACGAGTCCATTGAAGCCTACACCAGCAACATCTAC 6622615 >seq390 Length=2268 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 1935 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 1994 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||| ||||||| |||||||||||||| || Sbjct 1995 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 2030 >seq73 Length=1910340 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 1745359 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 1745300 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||| ||||||| |||||||||||||| || Sbjct 1745299 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 1745264 Score = 102 bits (112), Expect = 9e-17 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 |||||| ||||||||||||||||| || ||| ||| || |||||||| || ||| | || Sbjct 1749251 CGTGGAGGGAATCTTCTTCTCTGGTTCCTTCGCTGCCATCTTCTGGCTGAAGAAGAGAGG 1749192 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGAT 60097 ||| ||||| ||||||| |||||||||||||| || Sbjct 1749191 CCTGATGCCCGGCCTGACCTTCTCCAACGAGCTCAT 1749156 >seq4 Length=14220794 Score = 86.0 bits (94), Expect = 7e-12 Identities = 97/130 (75%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 59982 CGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATT 60041 || ||| | || || ||| ||||| || ||||||||||||||||| ||| | | || Sbjct 7897673 CGACTCGTGGCATTCGCAGCGGTGGAGGGCATCTTCTTCTCTGGCTCCTTCGCTTCCATC 7897614 Query 60042 TTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCC 60101 | |||||||| || || || || ||||| || || | | ||||||||||||||| | Sbjct 7897613 TATTGGCTCAAGAAACGGGGACTGATGCCCGGTCTTACCTACTCCAACGAGCTGATCAGC 7897554 Query 60102 CGGGACGAGG 60111 ||||||||| Sbjct 7897553 AGGGACGAGG 7897544 >seq18 Length=14161719 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || || ||||||| ||| || ||||||||||| | ||||| |||||| |||||| | Sbjct 3645558 ATCTCCGTGCACAGATTGCTGGATTTGATGGTGCCCAGGTTCTGCTGGTTACTCTTCCTG 3645617 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTC 79205 || ||||||||||||||| |||||||| || || || || Sbjct 3645618 TTGCAGGCGTCCTTGTAGAGTATGTACGGTGTGCCCGTTTC 3645658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548486732378880