Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2 172 6e-38 seq97 100 3e-16 seq390 86.0 7e-12 seq73 86.0 7e-12 seq801 84.2 2e-11 >seq2 Length=17630497 Score = 172 bits (190), Expect = 6e-38 Identities = 423/633 (67%), Gaps = 10/633 (2%) Strand=Plus/Plus Query 53325 TGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGC 53384 |||| |||||||||||| | || ||||| || ||| ||||| || || ||||| || | Sbjct 6621384 TGTCCAGCTGCTTCCTGCTCGCCATGAAAGACGACAGCATCGAGGGGATTTACGATACAC 6621443 Query 53385 TCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTAT-CCA--CTGCTCGA 53441 | ||| |||| |||| ||||||||||| | | || || ||||| | || | ||| Sbjct 6621444 TGAAGCAGTGCGCCCTCATCTCCAAGTCGGCCGGAGGAATCGGCGTGGCAGTCAGCT--- 6621500 Query 53442 ACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGC 53501 | |||| | | || | ||| || || |||||| | || |||| | || | Sbjct 6621501 GCATCCGATCAACAGGGAGCTACATCGCCGGCACCAACGGCAACTCCAATGGTCTAGTCC 6621560 Query 53502 CTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCA 53561 | ||||| | || | |||||||||||| ||||||||| ||||||| || ||| | Sbjct 6621561 CCATGCTGAGAGTGTACAACAACACGGCGCGGTACGTCGACCAGGGCGGCAACAAGAGGC 6621620 Query 53562 AGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGC 53621 || | |||||||| ||| | ||||| |||||| || | | || || || |||| Sbjct 6621621 CCGGAGCTTTCGCCATGTACTTGGAGCCCTGGCACTTTGATGTGTTTGACTTCCTGGAGC 6621680 Query 53622 TGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGG 53680 || || || | || ||| | | | | ||||| || ||| || |||||| Sbjct 6621681 TGAAGAAAAACACAGGAAAGGAGGAGCAGAGGGCCAGAGACCTCTTCTAC-GCCCTGTGG 6621739 Query 53681 ATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCG 53740 || || ||||| |||||| | | |||||||| ||||||| |||| |||||||| || Sbjct 6621740 ATCCCCGACCTGTTCATGAAGAGGGTGGAGACCAACGAGGACTGGTCTCTGATGTGTCCA 6621799 Query 53741 AACGAGTGCCCCGGCCTCCA-GGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGAC 53799 ||||| |||||||| || | | ||| || || |||||||| | || | || | Sbjct 6621800 AACGAATGCCCCGGGCTGGACGAGTG-CTGGGGGGAGGAGTTCGAGAAGCTCTACACCTC 6621858 Query 53800 GTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAAT 53859 || | | ||||| ||| ||| ||||| | || | ||| | || || Sbjct 6621859 ATATGAGAAAGAAGGCCGGGTGAAGCGTGTGGTGAAGGCTCAGCAGCTTTGGCACGCCAT 6621918 Query 53860 CCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGA 53919 | | || |||| ||| || || ||||| |||||| |||||| || || |||| Sbjct 6621919 CATTGAGTCCCAGACGGAAACTGGCACGCCATACATGCTCTACAAAGACTCCTGCAACAG 6621978 Query 53920 GAAGAGCAACCAGAAGAACATCGGCGTCATCAA 53952 |||||||||||| ||||| | ||| |||||| Sbjct 6621979 GAAGAGCAACCATCAGAACCTGGGCACCATCAA 6622011 >seq97 Length=810391 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| |||||||||| ||| |||||||||||||| ||| | || ||||| || || Sbjct 250465 GTGAAGATGTAACGAGGGCTGGCAGCATCCTTGCCTCCATTTATGCGAGTACCAAACTGA 250406 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || |||| || || ||||| |||||| |||||||||||| || |||||||| ||| Sbjct 250405 CCCAGGGGCTGCAGGATGTTCAAGTTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACA 250346 Query 117425 ATCGT 117429 || || Sbjct 250345 ATTGT 250341 Score = 91.5 bits (100), Expect = 2e-13 Identities = 95/125 (76%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||||||||| || | |||||| ||||||||||| || | || || |||||||| Sbjct 250465 GTGAAGATGTAACGAGGGCTGGCAGCATCCTTGCCTCCATTTATGCGAGTACCAAACTGA 250406 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 || ||||| |||| ||| | |||||| |||||| || ||||| ||||| |||||| Sbjct 250405 CCCAGGGGCTGCAGGATGTTCAAGTTGTTACTGCCCACAAAGTTCTGGGCCAAGTTCACA 250346 Query 152149 ATCGT 152153 || || Sbjct 250345 ATTGT 250341 >seq390 Length=2268 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || || || | ||||| ||||| || || | ||||||| Sbjct 2042 TCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1983 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | ||| ||||||||| |||||||||| ||||||||| || || || Sbjct 1982 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 1936 >seq73 Length=1910340 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || || || | ||||| ||||| || || | ||||||| Sbjct 1745252 TCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1745311 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | ||| ||||||||| |||||||||| ||||||||| || || || Sbjct 1745312 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 1745358 Score = 86.0 bits (94), Expect = 7e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || || || | ||||| ||||| || || | ||||||| Sbjct 1749144 TCATCTCTGCTGATGAGCTCGTTGGAGAAGGTCAGGCCGGGCATCAGGCCTCTCTTCTTC 1749203 Query 74832 AACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGAC 74878 | ||| ||||||||| |||||||||| ||||||||| || || || Sbjct 1749204 AGCCAGAAGATGGCAGCGAAGGAACCAGAGAAGAAGATTCCCTCCAC 1749250 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 1744251 TACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 1744310 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||| ||||||| ||| | ||| || Sbjct 1744311 AAGTCGAAGGGGTTCTCTGCCCGGTAGAT 1744339 >seq801 Length=1329 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/89 (81%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || || ||||| ||||| ||||||||||| || |||| |||||||||||||| Sbjct 529 TACTCGCCCACACGCTTCTCAAAGAAGTTGGTCTTTCCCTCCAGAGAGATGTTCTCCATG 588 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAAT 74551 ||||||| ||||||| ||| | ||| || Sbjct 589 AAGTCGAAGGGGTTCTCTGCCCGGTAGAT 617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178023209600