Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Mola_20mola_20[genbank_20GCA_5F001698575.1_202016-08-08] 5,552 sequences; 639,451,992 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq33 95.1 8e-15 seq37 93.3 3e-14 seq3 87.8 1e-12 >seq33 Length=5647056 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/232 (69%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 |||||||| ||||||| || | |||||| ||| || || || ||||| || || || Sbjct 6211 CCGCCTCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6152 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || | | ||| ||||| || || Sbjct 6151 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 6092 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGTCTTCGCTCTCCACT 34659 | ||||||||||| |||||| || | | ||| ||||| | ||| || Sbjct 6091 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTTTCAATGGTGTCACTGGGCTCAACC 6032 Query 34660 TCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT-GTTG 34710 |||| ||| || || || || || | || || ||||| |||||||| |||| Sbjct 6031 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCATAGTTG 5980 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| || ||||||| || | |||||| ||| || || || ||||| || || || Sbjct 6439 CCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTGTAGTCAGAG 6380 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || || || |||||||| || | | || ||||| || || Sbjct 6379 AGGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGG 6320 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| | ||| || Sbjct 6319 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 6261 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || || ||||| |||||||| Sbjct 6260 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 6213 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || || || |||| || | |||||| ||| ||||| || ||||| || || || Sbjct 8267 CCACCCCTCAGGCGCAGGACAAGATGGAGGGTGGATTCCTTCTGGATGTTGTAGTCAGAG 8208 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | ||||| || ||||| |||||||| || | | || ||||| || || Sbjct 8207 AGGGTGCGGCCATCTTCCAGCTGTTTGCCGGCAAAGATCAGCCTTTGCTGGTCAGGGGGG 8148 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACG-ATAAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||| || | || ||| | ||| ||||| | ||| || Sbjct 8147 ATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTTTCAATGGTGTCACTGGGCTCAAC 8089 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 |||| ||| || || || || || | || || ||||| |||||||| Sbjct 8088 CTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACAAAGATCTGCAT 8041 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| || ||||||| || | |||||| ||| || || || |||||||| || || Sbjct 12022 GCCGCCCCTCAGACGCAGGACAAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCAGA 11963 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || ||||| || | | ||| || || ||||| Sbjct 11962 GAGGGTGCGACCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGCGG 11903 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || || | ||| ||||| | || | Sbjct 11902 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTCACATTCTCAATGGTGTCGCTGGGTTCAA 11844 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | || ||||| || ||||||||| Sbjct 11843 CCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 11794 >seq37 Length=6129110 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || |||| ||| | || || ||| |||||| ||||||||||| || || Sbjct 1723263 CCTCCTCTCAGGCGCAGCACGAGGTGAAGGGTGGACTCCTTCTGAATGTTATAGTCAGAG 1723204 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | || |||||||| || |||||||| || | |||||| ||||| | || Sbjct 1723203 AGGGTGCGGCCATCCTCAAGTTGCTTGCCGGCAAAGATCAGACGCTGCTGGTCAGAGGGG 1723144 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||| || ||||| | | || || | ||| | | | |||||| Sbjct 1723143 ATGCCTTCCTTATCCTTGATC-TGGGCCTTCACATTCTCAATGGCGCAGTTTGGCTCCAC 1723085 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||| || || || || |||| || || || || |||||||| Sbjct 1723084 TTCCAAGGTGATGGTCTTGCCAGTTAGGGTCTTGACGAAGATCTGCAT 1723037 >seq3 Length=24902066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| ||||||||||||| |||| |||||| ||| || || || |||||||| || || Sbjct 14701066 GCCTCCTCTAAGACGCAGGACCAGATGGAGGGTGGATTCTTTCTGGATGTTATAGTCGGA 14701125 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || ||||| || | | ||| ||||| || || Sbjct 14701126 GAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAAGATCAGTCTCTGCTGGTCAGGAGG 14701185 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | || |||||||| |||| || | || || | ||| ||||| | ||| | Sbjct 14701186 AATGCCTTCCTTGTCCTGGATC-TTGGCCTTCACATTGTCAATGGTGTCACTGGCCTCAA 14701244 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | || | ||| || || || || || | || || ||||| ||||||||| Sbjct 14701245 CCTCTAGGGTAATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATG 14701294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314708303821616